FC876856

Overview
NameFC876856
Unique NameFC876856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR3_SHEEP (Solute carrier family 2, facilitated glucose transporter member 3 OS=Ovis aries GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.758e-18
Identity = 68/262 (25.95%), Postives = 120/262 (45.80%), Query Frame = 2
Query:    8 GVPGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMT-SDQEKAILVLSKIYDIARLEDEIDHLSSAADEELR--KNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALI---GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            G   L   +LG + +P+II    + F PESPR+L +   ++EKA  +L +++     ED    +    DE +R  + K V  L++F +   R                 I  V YYS  I + AG Q    A   ++     N + T+V ++L++  GR+ L L  L G+    +L++ + +          Y W++ I    + +++AFF  G GP+PW + +E++ +  R     ++   N  SN +V   F +    +G
Sbjct:  179 GTEDLWPLLLGFTILPAIIQCAALPFCPESPRFLLINRKEEEKAKEILQRLWGT---EDVAQDIQEMKDESMRMSQEKQVTVLELFRAPNYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVQEPVYA---TIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKDN------YSWMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLFPSATFYLG 428          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.296e-18
Identity = 66/247 (26.72%), Postives = 115/247 (46.56%), Query Frame = 2
Query:   35 LGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAG-TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV----LLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTV 760
            LG++ VP++++ V   F+P++P  +    ++EKA  +L KI     +E E + L +A   E  K     + ++ +    R                 I  +M+Y+P + +  GF ++  A L+S  + G  N + TIV IY +D FGR+ L L     +I++ +    ++ W F          V   I L  + LY+A FA   GP+ W + SE+ P + R     ++ +VN      +   FLT+
Sbjct:  207 LGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGTMEVEHEFNELCNAC--EAAKKVKHPWTNI-MQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGND--ASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTM 448          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GLCP_SYNY3 (Glucose transport protein OS=Synechocystis sp. (strain PCC 6803) GN=gtr PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.999e-18
Identity = 71/268 (26.49%), Postives = 121/268 (45.15%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIY--DI-ARLED-----EIDHLSSAADEELRKNKT--VIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----IXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            WM     +P+++  V    +PESPR+L      EKA  +L K+   D+ +R+E+      +DH    +D   R+     ++++ + +S                     I  + YYS  + +  GF +   +LL+++     N + T+V I  +D FGRK L L    G+ I+L +LS  F    +           G IAL+   LY+  F    GP+ W L  E++  + R     ++A V  I+N I++ TF  + + VG G  +
Sbjct:  187 WMFWTELIPALLYGVCAFLIPESPRYLVAQGQGEKAAAILWKVEGGDVPSRIEEIQATVSLDHKPRFSDLLSRRGGLLPIVWIGMGLSA--------------LQQFVGINVIFYYSSVLWRSVGF-TEEKSLLITVITGFINILTTLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALVTANLYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVGLGPAY 439          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR3_RABIT (Solute carrier family 2, facilitated glucose transporter member 3 (Fragment) OS=Oryctolagus cuniculus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.916e-18
Identity = 60/250 (24.00%), Postives = 116/250 (46.40%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEE--LRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +LG + +P+I+    + F PESPR+L +  ++++A  +L  +  +   +D    +    +E   +R+ K V  L++F +   R                 I  V YYS  I + AG +     +  ++     N + TIV ++L++  GR+ L L  L G+ +  VL++ + +  X      +   + +  + +Y AFF  G GP+PW + + ++ +  R     ++   N  SN +V   F + A  +G
Sbjct:   90 LLGFTIIPAILQSAALPFCPESPRFLLINKEEDEAKQILQILQRLWGTQDVAQDIQEMKEESARMRQEKQVTVLELFRAPSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVRE---PIYATIGAGVVNTIFTIVSVFLVERAGRRTLHLIGLGGMALCSVLMTVSLLLKXKYDTMSL---VCIAAILIYAAFFEIGPGPIPWLIVTGLFSQDPRPAAMAVAGCSNWTSNFLVGLLFPSAAYYLG 333          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR3_CHICK (Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.916e-18
Identity = 65/257 (25.29%), Postives = 116/257 (45.14%), Query Frame = 2
Query:    8 GVPGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMTS-DQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            G   L   +LG + VP+++  V +LF PESPR+L +   ++EKA  VL K+     +  +I  +   + +  ++ K  + L++F S   R                 I  V YYS  I + AG      A   ++     N V T+V ++L++  GR+ L L  L G+ +   +++ A              +I+++    ++A F  G GP+PW + +E++ +  R     ++   N  SN +V   F    +L G
Sbjct:  180 GTEALWPLLLGFTIVPAVLQCVALLFCPESPRFLLINKMEEEKAQTVLQKLRGTQDVSQDISEMKEESAKMSQEKKATV-LELFRSPNYRQPIIISITLQLSQQLSGINAVFYYSTGIFERAGITQPVYA---TIGAGVVNTVFTVVSLFLVERAGRRTLHLVGLGGMAVCAAVMTIALALKEKWIR-----YISIVATFGFVALFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGMLFPYAEKLCG 427          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR3_CANFA (Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.916e-18
Identity = 57/252 (22.62%), Postives = 119/252 (47.22%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMT-SDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALI---GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +LG + +P+++    + F PESPR+L +   ++E A  +L +++    +  +I  +   +   + + K V  L++F S+  R                 I  V YYS  I + AG +     +  ++     N + T+V ++L++  GR+ L +  L G+ +  +L++ + +          Y W++ +    + +++AFF  G GP+PW + +E++ +  R     ++   N  SN +V   F + A  +G
Sbjct:  187 LLGFTIIPAVLQSAALPFCPESPRFLLINRKEEENAKEILQRLWGTQDVSQDIQEMKDES-ARMAQEKQVTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVEE---PIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDN------YNWMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAFYLG 428          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: ARAE_BACSU (Arabinose-proton symporter OS=Bacillus subtilis GN=araE PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.115e-18
Identity = 57/226 (25.22%), Postives = 102/226 (45.13%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS 706
            WML    VPS+I F+++L +PESPRWL       +A+ +L++I      ++E+ ++     E   K + +  L       +R                 +  + YY P I +M GF  N    + +  V     + T++ + LID  GRKKL     A + I ++L+  +F            G + ++ +  ++A F   +GP+ W + SE++P   R    G++
Sbjct:  188 WMLAYGMVPSVIFFLVLLVVPESPRWLAKAGKTNEALKILTRINGETVAKEELKNI-----ENSLKIEQMGSLSQLFKPGLRKALVIGILLALFNQVIGMNAITYYGPEIFKMMGFGQN-AGFVTTCIVGVVEVIFTVIAVLLIDKVGRKKLMSIGSAFMAIFMILIGTSF------YFELTSGIMMIVLILGFVAAFCVSVGPITWIMISEIFPNHLRARAAGIA 401          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: ERDL7_ARATH (Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.680e-18
Identity = 67/245 (27.35%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   41 VSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIY--------DIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTF 751
            +  +P    F+ + F+PESPRWL       +    L K+         + A ++D I+ L     E L K K    LD+F  + IR                 I  + +Y+ +I + AGF +     L  +  A    V T +   ++D  GRK L L S  G++I  ++ + +F              +A++G+ +YI  F+ GMG +PW + SE++P   +G+ GGM+  VN      V+ TF
Sbjct:  185 IGIIPCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETL-----ERLPKAKM---LDLFQRRYIRSVLIAFGLMVFQQFGG-INGICFYTSSIFEQAGFPTR----LGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTF 416          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR4_HUMAN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Homo sapiens GN=SLC2A4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.139e-17
Identity = 70/264 (26.52%), Postives = 121/264 (45.83%), Query Frame = 2
Query:    8 GVPGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQE----KAILVLSKIYDI----ARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            G   L   +LG++ +P+++  VL+ F PESPR+L++  + E    K++  L+   D+    A L+DE          +L + + +  L +  S+  R                 I  V YYS +I + AG      A   ++     N V T+V + L++  GR+ L L  LAG+    +L++ A +             +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   N  SN I+   F  VAE +G
Sbjct:  197 GTASLWPLLLGLTVLPALLQLVLLPFCPESPRYLYIIQNLEGPARKSLKRLTGWADVSGVLAELKDE--------KRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFETAGVGQPAYA---TIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPAMSYVSIVAIFG---FVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTSNFIIGMGFQYVAEAMG 446          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.944e-17
Identity = 66/265 (24.91%), Postives = 125/265 (47.17%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMT---------SDQEKAILVLSKIYDIARLEDEIDHLSSAADEE--LRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +M   S   ++I+ + M ++P SPRWL +          + +E AI  L  +   A ++   + ++    E   + ++K V + ++F  K ++                   +V+YY+P+I+Q AGF +   A  +S+ +     + T V + +ID  GR+ L L  + G+++SL LL   ++             +A++ L LY+  +    GP+ W + SE++P + RG    ++  VN  +N +V   F  + EL+G G  F
Sbjct:  212 YMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITGQ-PSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPV------VAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILF 469          
The following BLAST results are available for this feature:
BLAST of FC876856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
GTR3_SHEEP1.758e-1825.95Solute carrier family 2, facilitated glucose trans... [more]
STP11_ARATH2.296e-1826.72Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
GLCP_SYNY32.999e-1826.49Glucose transport protein OS=Synechocystis sp. (st... [more]
GTR3_RABIT3.916e-1824.00Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CHICK3.916e-1825.29Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CANFA3.916e-1822.62Solute carrier family 2, facilitated glucose trans... [more]
ARAE_BACSU5.115e-1825.22Arabinose-proton symporter OS=Bacillus subtilis GN... [more]
ERDL7_ARATH6.680e-1827.35Sugar transporter ERD6-like 7 OS=Arabidopsis thali... [more]
GTR4_HUMAN1.139e-1726.52Solute carrier family 2, facilitated glucose trans... [more]
XYLL2_ARATH1.944e-1724.91D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF01RM1 EHR Citrus clementina cDNA clone KN0AAN1CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876856 ID=FC876856; Name=FC876856; organism=Citrus clementina; type=EST; length=792bp
TGCACGAGGGGTCCCCGGACTATGCATATGGATGCTTGGAGTATCAGCTG
TGCCATCTATCATTCTTTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCT
AGATGGCTTTTCATGACCAGTGACCAAGAAAAAGCCATTTTGGTTCTTTC
TAAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAT
CTGCTGCAGATGAAGAACTCCGAAAAAATAAAACTGTCATATACTTGGAT
GTTTTTATATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACT
TCAGGCATTTCAGCAGTTCACTGGTATCACCACAGTCATGTACTACAGCC
CGACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCACCTAGCGCTTCTC
CTATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAAT
TTATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAG
CTGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGA
TCATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCACTCATCGGGTT
AGCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGA
CTCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGT
ATGTCAGCTACTGTGAACTGCATCTCAAATTTGATCGTGGCCCCCACCTT
CCTGACGGTTGCTGAACTAGTGGGCACTGGAGCCCCTTTCTT
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