FC876856

Overview
NameFC876856
Unique NameFC876856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: PLST1_ARATH (Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.944e-17
Identity = 72/253 (28.46%), Postives = 113/253 (44.66%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            ML V+++P  +L + M F  ESPRWL      + A +V+  I+  + +E  ++   S        N    +L++ + K                    I  V+Y+S    Q  G  S   A   SL V  TN  G +   YLID  GRKKL + S  G+ +S+ L+ +A           +   ++++G  +YI  FA G GPV   +  E+   + RG   G S +V+ +SN +V   FL + E  G G  +
Sbjct:  240 MLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNS-GSNLNSRWLEL-LDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQA---SLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAV---GFPLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVY 484          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: YFIG_BACSU (Putative metabolite transport protein yfiG OS=Bacillus subtilis GN=yfiG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 63/254 (24.80%), Postives = 116/254 (45.67%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +ML ++ +P+++L+  ML +PESPRWL        A+ VL +I + ++ + EI  +  A +   +K         F    IR                 + ++MYY   I++ AGFQ+   AL+ ++A    + +  I GI+L+    R+ + +    G + +L+L+    I            ++ L    L++AF    +  V W + SE++P   RG+  G+S      +N ++  TF  +   +G  A F
Sbjct:  185 YMLVIATLPAVVLWFGMLIVPESPRWLAAKGRMGDALRVLRQIREDSQAQQEIKEIKHAIEGTAKK----AGFHDFQEPWIRRILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQT-EAALIGNIANGVISVIAVIFGIWLLGKVRRRPMLIIGQIGTMTALLLIG---ILSIVLEGTPALPYVVLSLTILFLAFQQTAISTVTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATF 430          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR4_RAT (Solute carrier family 2, facilitated glucose transporter member 4 OS=Rattus norvegicus GN=Slc2a4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.655e-17
Identity = 63/250 (25.20%), Postives = 115/250 (46.00%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEE--LRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +L ++ +P+++  +L+ F PESPR+L++  + E        +  +    D  D L+   DE+  L + + +  L +  S+  R                 I  V YYS +I ++AG +    A   ++     N V T+V + L++  GR+ L L  LAG+    +L++ A +             +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   N   N IV   F  VA+ +G
Sbjct:  205 LLAITVLPALLQLLLLPFCPESPRYLYIIRNLEGP--ARKSLKRLTGWADVSDALAELKDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFELAGVEQPAYA---TIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPSMSYVSIVAIFG---FVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADAMG 446          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 66/246 (26.83%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   35 LGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVG-TIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----IXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFL 754
            LG + VP++I+ V  L +P++P  +        A   L KI  +  ++DEI+ L  A++           L   + ++ R                 I  +M+Y+P + Q  GF S+  A L+S  V G   VG T+V IY +D +GR+ L L     ++IS V ++ A      +          Y  + ++ + +Y+A FA   GP+ W + SE++P + R     ++ +VN I   ++A  FL
Sbjct:  203 LGGAVVPALIITVGSLILPDTPNSMIERGQFRLAEAKLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNL---LQRKYRPHLTMAILIPAFQQLTGINVIMFYAPVLFQTIGFGSD--AALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFL 443          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR4_BOVIN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.260e-16
Identity = 62/252 (24.60%), Postives = 117/252 (46.43%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQE----KAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +LG++ +P+++  VL+   PESPR+L++  + E    K++  L+   D++ +  E+         +L + + +  L +  S   R                 I  V YYS +I + AG +    A   ++     N V T+V ++L++  GR+ L L  LAG+    +L++ A +             +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   N   N I+   F  VA+ +G
Sbjct:  205 LLGITVLPALLQMVLLPLCPESPRYLYIIRNLEGPARKSLKRLTGWADVSEVLAELKE----EKRKLERERPLSLLQLLGSHTHRQPLVIAIVLQLSQQLSGINAVFYYSTSIFESAGVEKPAYA---TIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPAMSYVSIVAIFG---FVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIIGMGFQYVADAMG 446          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 63/248 (25.40%), Postives = 111/248 (44.76%), Query Frame = 2
Query:   35 LGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGT-NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----IXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTV 760
            LG++AVP++I+ +    +P++P  +      E+A  +L KI     +++E   L  A   E  K     + ++F   + R                 I  +M+Y+P + +  GF  +  A L+S  + G  N V T+V IY +D +GR+ L L     +I+S +++                      WI L  + LY+A FA   GP+ W + SE+ P + R     ++ +VN     ++   FLT+
Sbjct:  206 LGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDLCDAC--EAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADD--ASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWI-LAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTM 448          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: HUP2_CHLKE (H(+)/hexose cotransporter 2 OS=Chlorella kessleri GN=HUP2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 59/246 (23.98%), Postives = 110/246 (44.72%), Query Frame = 2
Query:   35 LGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS----LAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTV 760
            LG++ VP+IIL +  L +PE+P  L     + +   VL+++     ++ E + + +AA+E  R      +  +F S++                   I  +M+Y P +    G  + H ALL ++ +   N   T V I+ +D FGR+ L L        G +++  +L                  + L+ + +Y+A FA   GP+ W + SE+   + RG    M+  VN + + ++   FL++
Sbjct:  210 LGLAGVPAIILLIGSLLLPETPNSLIERGHRRRGRAVLARLRRTEAVDTEFEDICAAAEESTRYTLRQSWAALF-SRQYSPMLIVTSLIAMLQQLTGINAIMFYVPVLFSSFG-TARHAALLNTVIIGAVNVAATFVSIFSVDKFGRRGLFLEGGIQMFIGQVVTAAVLGVELNKYGTNLPSSTAAGV-LVVICVYVAAFAWSWGPLGWLVPSEIQTLETRGAGMSMAVIVNFLFSFVIGQAFLSM 452          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR3_PONAB (Solute carrier family 2, facilitated glucose transporter member 3 OS=Pongo abelii GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 56/249 (22.49%), Postives = 113/249 (45.38%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMT-SDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +LG + +P+I+    + F PESPR+L +   ++E A  +L +++    +  +I  +   +   + + K V  L++F     R                 I  V YYS  I + AG Q     +  ++     N + T+V ++L++  GR+ L +  L G+     L++ + +            ++ +  + +++AFF  G GP+PW + +E++ +  R     ++   N  SN +V   F + A  +G
Sbjct:  187 LLGFTILPTILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQEMKDES-ARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQE---PIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGM---SFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLG 428          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR3_HUMAN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Homo sapiens GN=SLC2A3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 56/249 (22.49%), Postives = 113/249 (45.38%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMT-SDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +LG + +P+I+    + F PESPR+L +   ++E A  +L +++    +  +I  +   +   + + K V  L++F     R                 I  V YYS  I + AG Q     +  ++     N + T+V ++L++  GR+ L +  L G+     L++ + +            ++ +  + +++AFF  G GP+PW + +E++ +  R     ++   N  SN +V   F + A  +G
Sbjct:  187 LLGFTILPAILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQEMKDES-ARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQE---PIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGM---SFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLG 428          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR4_MOUSE (Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 63/250 (25.20%), Postives = 113/250 (45.20%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEE--LRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +L ++ +P+++  +L+ F PESPR+L++  + E        +  +    D  D L+   DE+  L + + +  L +  S+  R                 I  V YYS +I + AG      A   ++     N V T+V + L++  GR+ L L  LAG+    +L++ A +             +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   N   N IV   F  VA+ +G
Sbjct:  205 LLALTVLPALLQLILLPFCPESPRYLYIIRNLEGP--ARKSLKRLTGWADVSDALAELKDEKRKLERERPMSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFESAGVGQPAYA---TIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPAMSYVSIVAIFG---FVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADAMG 446          
The following BLAST results are available for this feature:
BLAST of FC876856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
PLST1_ARATH1.944e-1728.46Probable plastidic glucose transporter 1 OS=Arabid... [more]
YFIG_BACSU3.315e-1724.80Putative metabolite transport protein yfiG OS=Baci... [more]
GTR4_RAT5.655e-1725.20Solute carrier family 2, facilitated glucose trans... [more]
STP12_ARATH9.646e-1726.83Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
GTR4_BOVIN1.260e-1624.60Solute carrier family 2, facilitated glucose trans... [more]
STP9_ARATH2.149e-1625.40Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
HUP2_CHLKE2.149e-1623.98H(+)/hexose cotransporter 2 OS=Chlorella kessleri ... [more]
GTR3_PONAB2.807e-1622.49Solute carrier family 2, facilitated glucose trans... [more]
GTR3_HUMAN2.807e-1622.49Solute carrier family 2, facilitated glucose trans... [more]
GTR4_MOUSE3.666e-1625.20Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF01RM1 EHR Citrus clementina cDNA clone KN0AAN1CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876856 ID=FC876856; Name=FC876856; organism=Citrus clementina; type=EST; length=792bp
TGCACGAGGGGTCCCCGGACTATGCATATGGATGCTTGGAGTATCAGCTG
TGCCATCTATCATTCTTTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCT
AGATGGCTTTTCATGACCAGTGACCAAGAAAAAGCCATTTTGGTTCTTTC
TAAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAT
CTGCTGCAGATGAAGAACTCCGAAAAAATAAAACTGTCATATACTTGGAT
GTTTTTATATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACT
TCAGGCATTTCAGCAGTTCACTGGTATCACCACAGTCATGTACTACAGCC
CGACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCACCTAGCGCTTCTC
CTATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAAT
TTATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAG
CTGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGA
TCATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCACTCATCGGGTT
AGCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGA
CTCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGT
ATGTCAGCTACTGTGAACTGCATCTCAAATTTGATCGTGGCCCCCACCTT
CCTGACGGTTGCTGAACTAGTGGGCACTGGAGCCCCTTTCTT
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