FC876861

Overview
NameFC876861
Unique NameFC876861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10430 contig Ccv1_Contig10430:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP4_HUMAN (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.919e-33
Identity = 63/133 (47.37%), Postives = 100/133 (75.19%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS-FSKLVAE 745
            D+E+W AL++ Q K  I  L  K+D+ +++ G N+S GQRQL+CL R +L++N+IL++DEA A++D  TD ++Q+ IR++F++CTV+T+AHR+ T+IDSD +MVL  G+L EYDEP  +++   S F K+V +
Sbjct: 1143 DEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMVLDSGRLKEYDEPYVLLQNKESLFYKMVQQ 1275          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP2_RABIT (Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.919e-33
Identity = 68/151 (45.03%), Postives = 103/151 (68.21%), Query Frame = -2
Query:  323 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE----------YWSSCRRNS 745
            D+EIW+ALE    K+ ++ L++ L   VS+  +N S GQRQLLCLGR LL++++ILVLDEA A++D  TD ++Q  IR EFS+CTVIT+AHR+ T++DSD +MVL  G ++EY  P +++E+   FS +  E          +W++  R++
Sbjct: 1401 DEEIWRALELAHLKSFVAGLQHGLSREVSEAEDNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHRLHTIMDSDKIMVLDNGNIVEYGSPEELLESAGPFSLMAKESGIENVNNTAFWAAAARDA 1551          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP2_RAT (Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.118e-33
Identity = 65/132 (49.24%), Postives = 97/132 (73.48%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            D+E+W+ALE    ++ +S L+  L S V++ G+N S GQRQLLCLGR +L++++ILVLDEA A++D  TD+++Q  IR+EFS CTVIT+AHR+ T++DSD +MVL  GK++EY  P +++    SF  +  E
Sbjct: 1399 DEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRGSFYLMAKE 1530          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCC3_DICDI (ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.540e-32
Identity = 62/132 (46.97%), Postives = 93/132 (70.45%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            DD++W  L+  Q   +  SL   LDS V++ G+NWS GQRQLLCL R LL+  +ILVLDEA AS+D  +D+++Q  IR++FSNCT++T+AHR+ T++DSD ++VL  GK+ E+DEP  +++  +     + E
Sbjct: 1165 DDQLWSVLKDIQLHDVAKSLEGGLDSKVTENGDNWSVGQRQLLCLARALLRDPKILVLDEATASVDGHSDSLIQATIREKFSNCTILTIAHRLNTIMDSDRIIVLDAGKISEFDEPWTLLQNPAGLLNWLVE 1296          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP2_MOUSE (Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.261e-31
Identity = 64/132 (48.48%), Postives = 94/132 (71.21%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            D+EIW+ALE    K+ ++ L+  L   V++ G+N S GQRQLLCLGR +L++++ILVLDEA A++D  TD+++Q  IR EFS CTVIT+AHR+ T++DSD +MVL  GK++EY  P +++     F  +  E
Sbjct: 1401 DEEIWRALELAHLKSFVAGLQLGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEFSQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGPFYLMAKE 1532          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCC8_DICDI (ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.808e-31
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = -2
Query:  371 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS 745
            D EIW+A+E       I  L   LD+ V D G+N+S GQRQLL +GR LLK+  I+VLDEA++SID A+DA++Q  IR +F++CTV+T+AHR+ T+ DSD +MVL  G+L+EYD PS++++   S
Sbjct: 1447 DHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQDS 1571          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP2_HUMAN (Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.790e-31
Identity = 65/132 (49.24%), Postives = 94/132 (71.21%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            D+EIWKALE    K+ ++SL+  L   V++ G N S GQRQLLCLGR LL++++ILVLDEA A++D  TD ++Q  I+ EF++CTVIT+AHR+ T++DSD VMVL  GK++E   P ++++    F  +  E
Sbjct: 1403 DEEIWKALELAHLKSFVASLQLGLSHEVTEAGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPGPFYFMAKE 1534          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB11C_ARATH (ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.256e-31
Identity = 65/131 (49.62%), Postives = 97/131 (74.05%), Query Frame = -2
Query:  356 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETN-SSFSKLV 745
            D ++W+ALE+   K +I      LD+ VS+ GEN+S GQRQLL L R LL+R++IL LDEA AS+D  TD+++QR IR+EF +CT++ +AHR+ T+ID D ++VLS G++LEYD P +++  + S+F K+V
Sbjct: 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMV 1468          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP5_MOUSE (Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.105e-30
Identity = 59/125 (47.20%), Postives = 94/125 (75.20%), Query Frame = -2
Query:  371 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS 745
            +D+IW ALE+   K  I+ L  KL+S V + G+N+S G+RQLLC+ R LL+  +IL+LDEA A++D+ TD ++Q  IR+ F++CT++T+AHR+ TV+ SD +MVL+ G+++E+D PS ++  +SS
Sbjct: 1295 EDQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLRHCKILILDEATAAMDTETDLLIQETIREAFADCTMLTIAHRLHTVLGSDRIMVLAQGQVVEFDTPSVLLSNDSS 1419          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP5_HUMAN (Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.105e-30
Identity = 59/125 (47.20%), Postives = 94/125 (75.20%), Query Frame = -2
Query:  371 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS 745
            +D+IW ALE+   K  I+ L  KL+S V + G+N+S G+RQLLC+ R LL+  +IL+LDEA A++D+ TD ++Q  IR+ F++CT++T+AHR+ TV+ SD +MVL+ G+++E+D PS ++  +SS
Sbjct: 1296 EDQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLRHCKILILDEATAAMDTETDLLIQETIREAFADCTMLTIAHRLHTVLGSDRIMVLAQGQVVEFDTPSVLLSNDSS 1420          
The following BLAST results are available for this feature:
BLAST of FC876861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
MRP4_HUMAN3.919e-3347.37Multidrug resistance-associated protein 4 OS=Homo ... [more]
MRP2_RABIT3.919e-3345.03Canalicular multispecific organic anion transporte... [more]
MRP2_RAT5.118e-3349.24Canalicular multispecific organic anion transporte... [more]
ABCC3_DICDI2.540e-3246.97ABC transporter C family member 3 OS=Dictyostelium... [more]
MRP2_MOUSE1.261e-3148.48Canalicular multispecific organic anion transporte... [more]
ABCC8_DICDI2.808e-3151.20ABC transporter C family member 8 OS=Dictyostelium... [more]
MRP2_HUMAN4.790e-3149.24Canalicular multispecific organic anion transporte... [more]
AB11C_ARATH6.256e-3149.62ABC transporter C family member 11 OS=Arabidopsis ... [more]
MRP5_MOUSE3.105e-3047.20Multidrug resistance-associated protein 5 OS=Mus m... [more]
MRP5_HUMAN3.105e-3047.20Multidrug resistance-associated protein 5 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF08RM1 EHR Citrus clementina cDNA clone KN0AAN1CF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876861 ID=FC876861; Name=FC876861; organism=Citrus clementina; type=EST; length=746bp
GATAAACTGAAAACTTTTTATTATTGAATCAATGTATTTTACACACTTAT
ATCACGAGTATCCATTCCTTGTATAATAAACTGTTACACATGCACGTAGT
AATTCTTAAACCAATATAACAGATTGAGCCACGTCACCTAACTATAACAA
ACTGAACCACGTCAGCTTACGGAGCTAATCTGCTACAGTCCAACACACAG
TAACAATCATGTGCTCGCTTCCTCTGTTTCATCACAATTAACCAGTTTCA
CTAACAGTGGGACCCGTTCATGCAGAATTTCGGTTGTTGAGCTCATTACT
GAAAGTTATTCAAATTCTGGTAGGAATTTCTCCTGCAACTTGACCAGTAC
TCTGCTACAAGCTTGGAAAAGGAGGAATTAGTTTCCATAACCTTTGATGG
TTCATCATACTCCAACAATTTTCCATATGAGAGCACCATGACCATGTCAC
TATCAATAACAGTTGGTACTCTATGAGCTACCGTTATCACTGTGCAGTTG
GAGAATTCCTGCCTGATAATTCTCTGTAGAATAGCATCTGTTGCGGAATC
AATGGAAGCGTTAGCTTCATCCAGAACTAGAATTCTATTTCTCTTTAGGA
GGACTCTTCCAAGGCACAAGAGTTGGCGTTGCCCCGCGCTCCAATTTTCA
CCTTCATCACTCACAGATGAGTCCAGCTTATTGCGCAGGCTGCTGATAAT
TGTCTTACGCTGACACTTCTCCAGAGCCTTCCATATTTCATCATCT
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