FC876861

Overview
NameFC876861
Unique NameFC876861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10430 contig Ccv1_Contig10430:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCCD_DICDI (ABC transporter C family member 13 OS=Dictyostelium discoideum GN=abcC13 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 58/131 (44.27%), Postives = 94/131 (71.76%), Query Frame = -2
Query:  356 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMET-NSSFSKLV 745
            D EIW ALEK + K+ ISS+  KL++ + + G+  S GQ+QLLCL R +LK ++++++DEA + ID  T  ++++ + + F++CT++T+AHR+ T+IDS  + V+  G+L+EYD P  ++ T NS FSKLV
Sbjct: 1206 DSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNSKVVLMDEATSGIDYVTGDLIKQTLLENFNDCTMLTIAHRLDTIIDSTKIAVVDKGELIEYDTPINLINTKNSKFSKLV 1336          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCC9_RAT (ATP-binding cassette transporter sub-family C member 9 OS=Rattus norvegicus GN=Abcc9 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 61/131 (46.56%), Postives = 93/131 (70.99%), Query Frame = -2
Query:  356 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE-PSKVMETNSSFSKLV 745
            DD +W+ALE  Q K ++ SL   LD++V++ GEN+S GQRQL CL R  ++++ IL++DEA ASID AT+ ILQ+++   F++ TV+T+AHRV +++D+ +V+V S G L+E D  P+ +   N  FS LV
Sbjct: 1411 DDRLWEALEIAQLKNMVKSLPGGLDATVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSSIMDAGLVLVFSEGILVECDTGPNLLQHKNGLFSTLV 1541          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCC8_HUMAN (ATP-binding cassette transporter sub-family C member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5)

HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28
Identity = 55/125 (44.00%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  371 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS 745
            D  +W+ALE  Q K ++ +L   LD+ +++ GEN+S GQRQL CL R  +++  I ++DEA ASID AT+ ILQ+++   F++ TV+T+AHRV T++ +D+V+VL  G +LE+D+P K++    S
Sbjct: 1447 DSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILSADLVIVLKRGAILEFDKPEKLLSRKDS 1571          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCC9_HUMAN (ATP-binding cassette transporter sub-family C member 9 OS=Homo sapiens GN=ABCC9 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 61/131 (46.56%), Postives = 92/131 (70.23%), Query Frame = -2
Query:  356 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE-PSKVMETNSSFSKLV 745
            DD +W+ALE  Q K ++ SL   LD+ V++ GEN+S GQRQL CL R  ++++ IL++DEA ASID AT+ ILQ+++   F++ TV+T+AHRV +++D+ +V+V S G L+E D  P+ +   N  FS LV
Sbjct: 1415 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSSIMDAGLVLVFSEGILVECDTVPNLLAHKNGLFSTLV 1545          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCC8_CRICR (ATP-binding cassette transporter sub-family C member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 55/125 (44.00%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  371 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS 745
            D  +W+ALE  Q K ++ +L   LD+ +++ GEN+S GQRQL CL R  +++  I ++DEA ASID AT+ ILQ+++   F++ TV+T+AHRV T++ +D+VMVL  G +LE+D+P  ++    S
Sbjct: 1448 DSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILSADLVMVLKRGAILEFDKPETLLSQKDS 1572          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP1_BOVIN (Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 56/132 (42.42%), Postives = 89/132 (67.42%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            D+E+W +LE    K  +S+L +KL+   ++ GEN S GQRQL+CL R LL++ +ILVLDEA A++D  TD ++Q  IR +F +CTV+T+AHR+ T++D   V+VL  G++ E+  PS +++    F  +  +
Sbjct: 1395 DEEVWTSLELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFDDCTVLTIAHRLNTIMDYTRVIVLDKGEIQEWGSPSDLLQQRGLFYSMAKD 1526          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: ABCCB_HUMAN (ATP-binding cassette transporter sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 60/139 (43.17%), Postives = 91/139 (65.47%), Query Frame = -2
Query:  332 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKV-METNSSFSKLVAEYWSSCR 745
            D +IW ALE+      IS    KL + V + G N+S G+RQLLC+ R +L+ ++I+++DEA ASID  TD ++QR IR+ F  CTV+ +AHRV TV++ D ++V+  GK++E+D P  +  +  S F+ L+A   SS R
Sbjct: 1244 DQQIWDALERTFLTKAISKFPKKLHTDVVENGGNFSVGERQLLCIARAVLRNSKIILIDEATASIDMETDTLIQRTIREAFQGCTVLVIAHRVTTVLNCDHILVMGNGKVVEFDRPEVLRKKPGSLFAALMATATSSLR 1382          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP1_MOUSE (Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.197e-27
Identity = 57/132 (43.18%), Postives = 89/132 (67.42%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            D+E+W ALE    K  +S+L +KL+   ++ GEN S GQRQL+CL R LL++ +ILVLDEA A++D  TD ++Q  IR +F +CTV+T+AHR+ T++D   V+VL  G++ E   PS++++    F  +  +
Sbjct: 1393 DEEVWMALELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVRECGAPSELLQQRGIFYSMAKD 1524          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP1_CANFA (Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.197e-27
Identity = 56/132 (42.42%), Postives = 88/132 (66.67%), Query Frame = -2
Query:  350 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAE 745
            D+E+W +LE    K  +S L +KL+   ++ GEN S GQRQL+CL R LL++ +ILVLDEA A++D  TD ++Q  IR +F +CTV+T+AHR+ T++D   V+VL  G++ E  +PS +++    F  +  +
Sbjct: 1396 DEEVWTSLELAHLKDFVSGLPDKLNQECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFDDCTVLTIAHRLNTIMDYTRVIVLDKGEIRECGQPSDLLQQRGLFYSMAKD 1527          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: MRP3_HUMAN (Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  368 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSF 745
            +++IW ALE     T +SS    LD   S+ GEN S GQRQL+CL R LL+++RILVLDEA A+ID  TD ++Q  IR +F  CTV+T+AHR+ T++D   V+VL  G + E+D P+ ++     F
Sbjct: 1392 EEDIWWALELSHLHTFVSSQPAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQFDTCTVLTIAHRLNTIMDYTRVLVLDKGVVAEFDSPANLIAARGIF 1517          
The following BLAST results are available for this feature:
BLAST of FC876861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
ABCCD_DICDI4.957e-2844.27ABC transporter C family member 13 OS=Dictyosteliu... [more]
ABCC9_RAT4.957e-2846.56ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_HUMAN8.456e-2844.00ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_HUMAN1.442e-2746.56ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_CRICR1.442e-2744.00ATP-binding cassette transporter sub-family C memb... [more]
MRP1_BOVIN3.213e-2742.42Multidrug resistance-associated protein 1 OS=Bos t... [more]
ABCCB_HUMAN3.213e-2743.17ATP-binding cassette transporter sub-family C memb... [more]
MRP1_MOUSE4.197e-2743.18Multidrug resistance-associated protein 1 OS=Mus m... [more]
MRP1_CANFA4.197e-2742.42Multidrug resistance-associated protein 1 OS=Canis... [more]
MRP3_HUMAN2.083e-2646.83Canalicular multispecific organic anion transporte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF08RM1 EHR Citrus clementina cDNA clone KN0AAN1CF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876861 ID=FC876861; Name=FC876861; organism=Citrus clementina; type=EST; length=746bp
GATAAACTGAAAACTTTTTATTATTGAATCAATGTATTTTACACACTTAT
ATCACGAGTATCCATTCCTTGTATAATAAACTGTTACACATGCACGTAGT
AATTCTTAAACCAATATAACAGATTGAGCCACGTCACCTAACTATAACAA
ACTGAACCACGTCAGCTTACGGAGCTAATCTGCTACAGTCCAACACACAG
TAACAATCATGTGCTCGCTTCCTCTGTTTCATCACAATTAACCAGTTTCA
CTAACAGTGGGACCCGTTCATGCAGAATTTCGGTTGTTGAGCTCATTACT
GAAAGTTATTCAAATTCTGGTAGGAATTTCTCCTGCAACTTGACCAGTAC
TCTGCTACAAGCTTGGAAAAGGAGGAATTAGTTTCCATAACCTTTGATGG
TTCATCATACTCCAACAATTTTCCATATGAGAGCACCATGACCATGTCAC
TATCAATAACAGTTGGTACTCTATGAGCTACCGTTATCACTGTGCAGTTG
GAGAATTCCTGCCTGATAATTCTCTGTAGAATAGCATCTGTTGCGGAATC
AATGGAAGCGTTAGCTTCATCCAGAACTAGAATTCTATTTCTCTTTAGGA
GGACTCTTCCAAGGCACAAGAGTTGGCGTTGCCCCGCGCTCCAATTTTCA
CCTTCATCACTCACAGATGAGTCCAGCTTATTGCGCAGGCTGCTGATAAT
TGTCTTACGCTGACACTTCTCCAGAGCCTTCCATATTTCATCATCT
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