FC876868

Overview
NameFC876868
Unique NameFC876868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:1312..2017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  289 KAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 696
            +AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  I++A+EKVGG  L+TADHGN E M   +            Q  T+HT + VPL   G           ++  GG L+++A T   L G E P++
Sbjct:  385 EAIESTQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDSCIGRIVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELVPLIYVGRD--------AEIEKGGRLSDLAPTMLTLMGQEVPAE 503          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 60/137 (43.80%), Postives = 71/137 (51.82%), Query Frame = -2
Query:  295 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAP 705
            R  +AI  +RF  + VN  N DMVGHTG  EA V A +A D  V  I+DA+EKVGG  L+TADHGN E M                Q  T+HT +PVP    G     +VK R     G LA+VA T   L G E P
Sbjct:  379 RIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDALEKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNVKVR---EGGVLADVAPTMLKLLGLEKP 499          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 693
            AI S  +  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+EKVGG  L+TADHGN E M   +            Q  T+HT + +PL   G           ++ NGG L+++A T   L G + P +
Sbjct:  386 AIESTEYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELIPLIYVGRD--------AEIENGGRLSDLAPTMLTLMGQDVPEE 503          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_VIBPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio parahaemolyticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 693
            AI S ++  +  N PN+DMVGHTG  EA   A +A DE+V  +++AI++VGG  L+TADHGN E M+     G          V T+HT  PVPL   G      V+F+     G L+++A T  +L G E P++
Sbjct:  384 AIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDESVGKVVEAIKEVGGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain KT2440) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = -2
Query:  295 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAP 705
            R  +AI  +RF  + VN  N DMVGHTG  EA V A +A D  V  I+DA++KVGG  L+TADHGN E M                Q  T+HT +PVP    G     +VK R     G LA+VA T   L G E P
Sbjct:  379 RIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDALDKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNVKVR---EGGVLADVAPTMLKLLGLEKP 499          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPG (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain GB-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = -2
Query:  295 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAP 705
            R  +AI  +RF  + VN  N DMVGHTG  EA V A +A D  V  I+DA+EKVGG  L+TADHGN E M                Q  T+HT +PVP    G     ++K R     G LA+VA T   L G E P
Sbjct:  379 RIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDALEKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNLKVR---DGGVLADVAPTMLQLLGLEKP 499          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 56/139 (40.29%), Postives = 74/139 (53.24%), Query Frame = -2
Query:  289 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 705
            R  +AI ++R+  + VN  N DMVGH+G  EA V A +  D  V  I++A+EKVGG  L+TADHGN E M   +            Q  T+HT +PVP    G     D+K R     G LA+VA T   L G E P++
Sbjct:  378 RIVEAIENQRYDVIVVNYANGDMVGHSGVFEAAVKAVECLDTCVGRIVEALEKVGGEALITADHGNVEQMADESTG----------QAHTAHTTEPVPFIYVG---KRDLKVR---EGGVLADVAPTMLKLLGLEKPAE 500          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 56/136 (41.18%), Postives = 73/136 (53.68%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVP-LAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 693
            AI S+ F  V  N PN DMVGHTG+ +A V AC+A D +V  ++ A+E VGG  L+TADHGN E M                Q  T+HT + VP + +G P      K R    NG L++VA T  +L G E P +
Sbjct:  383 AIESQAFDVVICNYPNGDMVGHTGNFDAAVKACEAVDHSVGRVVSALEAVGGECLITADHGNAEQMSDATTG----------QAHTAHTNELVPFIYVGRP-----AKAR----NGRLSDVAPTILHLIGMEQPDE 499          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  289 KAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 696
            + I  + +  + +N  N DMVGHTG  EA   A +A DE +  ++ A+ +  G+ L+TADHGN E M+   ++G PF         T+HT  PVPL + G G   DVK R     G LA++A T  ++ G+E P +
Sbjct:  384 ECINKKEYDVIILNYANPDMVGHTGVFEAAKAAIEAIDECLGKVVPAVLEQNGVVLITADHGNSEQMID-YETGGPF---------TAHTTNPVPLIVIGLG---DVKLR----EGRLADLAPTMLDILGFEKPKE 502          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 54/138 (39.13%), Postives = 71/138 (51.45%), Query Frame = -2
Query:  289 KAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVP-LAIGGPGL-PDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 696
            +AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGN E M+     G            T+HT  P P   IGGPG   D ++ R     G LA+VA T   L     P+D
Sbjct:  405 QAITSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGPGYGKDTIRLR---SGGRLADVAPTLLELLELTPPAD 529          
The following BLAST results are available for this feature:
BLAST of FC876868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
GPMI_SHEHH1.047e-1637.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEP11.368e-1643.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA2.333e-1636.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBPA3.047e-1640.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPK3.047e-1643.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPG3.047e-1643.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPF3.047e-1640.292,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO3.047e-1641.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH5.198e-1637.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD5.198e-1639.132,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BC04RM1 EHR Citrus clementina cDNA clone KN0AAN3BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876868 ID=FC876868; Name=FC876868; organism=Citrus clementina; type=EST; length=706bp
GCACGAGGGAGAGAACTAGTCTCAGTTTTTTTTTTTTTTTTTTTTTTTTT
CTAACAAAAATAAATTTTGAGCTATATGGTTCTGTCTGCCTCCAACAGAC
AGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCAAAATGAATTCA
AGACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGGAATTCCTCCGG
AGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGTCGTCAGTTACT
TCTCAGTCGTCAGTTACTTCAATAAAACTTGGCTCGTAGTCACTAGGCGC
CTCATATCCATGGAGATTGAAAAAAGTTGCTGCTACATTGGCCAGCCCAC
CATTAGGGAGATCTGGGCGGAACTTGACATCATCTGGCAGTCCAGGACCT
CCGATTGCAAGGGGAACGGGTTTAAAAGTGTGAGACGTGAGCACTTGAAT
ATTGCCATCCTTAAAAAAAGGCTCCCCAGATTTGTTCCTCTTGACCATGT
CCTCACCATTGCCATGATCTGCAGTAACAAGATATATTCCACCAACTTTC
TCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCAGCCTTGCATGC
CACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCATGTCACTATTTG
GTAGGTTAACACGCACCTGGGGGAACCTGCGACTAAGGATGGCCTTCTTT
GCCCTT
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