FC876868

Overview
NameFC876868
Unique NameFC876868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:1312..2017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 54/140 (38.57%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  289 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 705
            R  +AI  +R+  + VN  N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T   L G E P++
Sbjct:  383 RIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 54/140 (38.57%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  289 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 705
            R  +AI  +R+  + VN  N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T   L G E P++
Sbjct:  383 RIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain PA7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 54/140 (38.57%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  289 RAKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 705
            R  +AI  +R+  + VN  N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T   L G E P++
Sbjct:  383 RIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  289 KAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 696
            + I S ++  + +N  N DMVGHTG  EA V A +A D+ +  I++A++++GG+ L+TADHGN E M+  +K+GEP          T+HT  PV     G G   +VK    L  G L ++A T   L G   P +
Sbjct:  386 RRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVEALKEIGGVALITADHGNAEQMID-SKTGEPH---------TAHTSNPVRCIYFGNG---EVK---ALKKGKLCDLAPTLLELIGIPKPQE 505          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHISS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 56/143 (39.16%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T  +L G E P +   +P FI
Sbjct:  386 AIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGKPLFI 512          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHIFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella flexneri GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 56/143 (39.16%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T  +L G E P +   +P FI
Sbjct:  386 AIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGKPLFI 512          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHIBS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 56/143 (39.16%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T  +L G E P +   +P FI
Sbjct:  386 AIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGKPLFI 512          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain K12) GN=gpmI PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 56/143 (39.16%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T  +L G E P +   +P FI
Sbjct:  386 AIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFI 512          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 56/143 (39.16%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T  +L G E P +   +P FI
Sbjct:  386 AIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGKPLFI 512          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmI PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 56/143 (39.16%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T  +L G E P +   +P FI
Sbjct:  386 AIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFI 512          
The following BLAST results are available for this feature:
BLAST of FC876868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
GPMI_PSEAE1.975e-1538.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAB1.975e-1538.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA71.975e-1538.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC1.975e-1537.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHISS2.580e-1539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIFL2.580e-1539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIBS2.580e-1539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLI2.580e-1539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLC2.580e-1539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL62.580e-1539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BC04RM1 EHR Citrus clementina cDNA clone KN0AAN3BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876868 ID=FC876868; Name=FC876868; organism=Citrus clementina; type=EST; length=706bp
GCACGAGGGAGAGAACTAGTCTCAGTTTTTTTTTTTTTTTTTTTTTTTTT
CTAACAAAAATAAATTTTGAGCTATATGGTTCTGTCTGCCTCCAACAGAC
AGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCAAAATGAATTCA
AGACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGGAATTCCTCCGG
AGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGTCGTCAGTTACT
TCTCAGTCGTCAGTTACTTCAATAAAACTTGGCTCGTAGTCACTAGGCGC
CTCATATCCATGGAGATTGAAAAAAGTTGCTGCTACATTGGCCAGCCCAC
CATTAGGGAGATCTGGGCGGAACTTGACATCATCTGGCAGTCCAGGACCT
CCGATTGCAAGGGGAACGGGTTTAAAAGTGTGAGACGTGAGCACTTGAAT
ATTGCCATCCTTAAAAAAAGGCTCCCCAGATTTGTTCCTCTTGACCATGT
CCTCACCATTGCCATGATCTGCAGTAACAAGATATATTCCACCAACTTTC
TCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCAGCCTTGCATGC
CACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCATGTCACTATTTG
GTAGGTTAACACGCACCTGGGGGAACCTGCGACTAAGGATGGCCTTCTTT
GCCCTT
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