FC876868

Overview
NameFC876868
Unique NameFC876868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:1312..2017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVP-LAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 693
            AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGN E M+     G            T+HT  P P   IGG G   D     +L +GG LA+VA T   L   E   D
Sbjct:  406 AIDSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYGKDA---IELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVP-LAIGGPGLPDDVKFRPDLPNGG-LANVAATFFNLHGYEAPSD 693
            AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGN E M+     G            T+HT  P P   IGG G   D     +L +GG LA+VA T   L   E   D
Sbjct:  406 AIDSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYGKDA---IELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/136 (35.29%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  289 KAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 696
            +AI S ++  V  N PN DMVGHTG+ +A V AC+A D  +  ++ A+ KV G  L+TADHGN E M   +            Q  T+HT + VP    G     D   +     G L+++A T  +L G   P++
Sbjct:  385 EAIESAKYDVVICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVAALAKVNGECLITADHGNAEQMTDESTG----------QAHTAHTSELVPFIYVG----RDASIK---DGGRLSDIAPTMLSLMGQPVPAE 503          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_AKKM8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  289 RFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 678
            ++  V +N  N DMVGHTG +EA + AC+A D A++  +  + ++GG  L+TADHGN E M  RN+ G P          T+HT   V L      + DD K +  L +G LA+VA T  +L G + P++
Sbjct:  390 KYDVVIMNFANGDMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHM--RNEDGSP---------NTAHTTNLVDLIY----VADD-KDQVTLSDGILADVAPTLLSLMGLKQPAE 503          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 46/125 (36.80%), Postives = 62/125 (49.60%), Query Frame = -2
Query:  289 VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVP-LAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 660
            VN  N DMVGHTGD+ A + AC+  D  +   ++A+ + GG  +VTADHGN E M+     G            T+HT  PVP + +GGP           L  G LA++A T   L G   P +
Sbjct:  390 VNYANPDMVGHTGDLRAAMAACEEVDRGLGRAVEAVRQAGGAMIVTADHGNCETMIDPETGGPH----------TAHTTNPVPVILVGGPA-------GARLRAGRLADLAPTLLELMGLPQPEE 497          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_ENTS8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/143 (37.06%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  271 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSDY--EPSFI 693
            AI S ++  +  N PN DMVGHTG  +A V A +A D  +  +  A+E  GG  L+TADHGN E M +   +G         Q  T+HT  PVPL   G       K    +  G L+++A T   L G E P +   +P FI
Sbjct:  387 AINSGKYDAIICNYPNGDMVGHTGVFDAAVAAVEALDNCIAQVTRAVEAAGGQMLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KAVKAVDGGKLSDIAPTLLTLMGMEIPQEMTGKPLFI 513          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 53/135 (39.26%), Postives = 68/135 (50.37%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 693
            AI S  +     N+ N DMVGHTGD  A V A +A DEA+  I+  I+ V G  +VTADHGN E M+   ++G+P         LTSHT  PVP    G       K  P    G L +V  T  ++ G E P +
Sbjct:  393 AIKSGEYDTFICNIANPDMVGHTGDFNACVQAAEAVDEALGEILATIKAVDGEAIVTADHGNME-MLFNEETGKP---------LTSHTTFPVPFVYFGK------KGYPLKDGGALCDVIPTLLDMMGIEKPEE 511          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_SHEFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = -2
Query:  289 AILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKD-GNIQVLTSHTFKPVPLA-IGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 693
            AI S ++  +  N PN DMVGH+G+ +A V AC+A D  +  +++A+ KV G  L+TADHGN E M           KD  N Q  T+HT   VP   +G   +  D         G L+++A T   L G   P +
Sbjct:  385 AIESTKYDVIICNYPNGDMVGHSGNFDAAVKACEAVDACIGRVVEALAKVDGECLITADHGNAEKM-----------KDPSNGQAFTAHTSNLVPFVYVGRDAVIKD--------GGRLSDIAPTMLTLMGQSIPKE 502          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_LAWIP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 47/132 (35.61%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  289 SRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPLAIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 684
            S++F  +  NL N DMVGHTG+I+A++ A +A D  V  I  A+ +  G +++TADHGN E+M+  +KSG+P          T+H+  PVPL     G P ++K      +G L ++A T  ++     P++
Sbjct:  385 SKKFSLIVCNLANPDMVGHTGNIKASISALEAVDNCVGRIEKAVAEQHGCFILTADHGNVEEML--DKSGQP---------QTAHSCNPVPLIAIYDGKPLNLK-----ESGKLGDIAPTILSIWDVSIPNE 500          
BLAST of FC876868 vs. ExPASy Swiss-Prot
Match: GPMI_GLOVI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gloeobacter violaceus GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = -2
Query:  289 AKKAILSRRFPQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNGEDMVKRNKSGEPFFKDGNIQVLTSHTFKPVPL------AIGGPGLPDDVKFRPDLPNGGLANVAATFFNLHGYEAPSD 702
            A  AI +R++  + +N  N DMVGHTG+ +ATV A +  D  +  +++A  + GG  L+TADHGN E M   ++ G P+         T+HT  PVP        +  PG   DV+ R     G L ++A T   + G   P++
Sbjct:  382 AVAAIETRQYSLIVINYANPDMVGHTGNFDATVKAVETVDACIGRLVEACVRAGGTMLLTADHGNAELM--WDEQGNPW---------TAHTTNPVPFILIESEGLKIPGWGTDVQLR---AGGSLGDIAPTILEILGLPQPAE 511          
The following BLAST results are available for this feature:
BLAST of FC876868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
GPMI_CHLSY3.725e-1439.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA3.725e-1439.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO4.865e-1435.292,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AKKM84.865e-1438.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS56.354e-1436.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ENTS86.354e-1437.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THICR8.298e-1439.262,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEFN8.298e-1435.772,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LAWIP8.298e-1435.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLOVI8.298e-1434.032,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BC04RM1 EHR Citrus clementina cDNA clone KN0AAN3BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876868 ID=FC876868; Name=FC876868; organism=Citrus clementina; type=EST; length=706bp
GCACGAGGGAGAGAACTAGTCTCAGTTTTTTTTTTTTTTTTTTTTTTTTT
CTAACAAAAATAAATTTTGAGCTATATGGTTCTGTCTGCCTCCAACAGAC
AGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCAAAATGAATTCA
AGACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGGAATTCCTCCGG
AGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGTCGTCAGTTACT
TCTCAGTCGTCAGTTACTTCAATAAAACTTGGCTCGTAGTCACTAGGCGC
CTCATATCCATGGAGATTGAAAAAAGTTGCTGCTACATTGGCCAGCCCAC
CATTAGGGAGATCTGGGCGGAACTTGACATCATCTGGCAGTCCAGGACCT
CCGATTGCAAGGGGAACGGGTTTAAAAGTGTGAGACGTGAGCACTTGAAT
ATTGCCATCCTTAAAAAAAGGCTCCCCAGATTTGTTCCTCTTGACCATGT
CCTCACCATTGCCATGATCTGCAGTAACAAGATATATTCCACCAACTTTC
TCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCAGCCTTGCATGC
CACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCATGTCACTATTTG
GTAGGTTAACACGCACCTGGGGGAACCTGCGACTAAGGATGGCCTTCTTT
GCCCTT
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