FC876875 | Citrus Genome Database

Overview


Name	FC876875
Unique Name	FC876875
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	354

Libraries


Library Name	Type
EHR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10418	contig	Ccv1_Contig10418:1..353.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.703e-24
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2

Query:  185 SHYAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            S + GSSHAKGIVLE +GIE+KQP SAIRKC RVQLIKNGKK+ AFVP+DGCLN+
Sbjct:   41 SPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNF 95

HSP 2 Score: 38.891 bits (89), Expect = 3.703e-24
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 1

Query:   76 GKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            GK RG  + R L+ HRR  RWA+ +Y K  LG  +K
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFK 39

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.703e-24
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2

Query:  185 SHYAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            S + GSSHAKGIVLE +GIE+KQP SAIRKC RVQLIKNGKK+ AFVP+DGCLN+
Sbjct:   41 SPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNF 95

HSP 2 Score: 38.891 bits (89), Expect = 3.703e-24
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 1

Query:   76 GKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            GK RG  + R L+ HRR  RWA+ +Y K  LG  +K
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFK 39

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.703e-24
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2

Query:  185 SHYAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            S + GSSHAKGIVLE +GIE+KQP SAIRKC RVQLIKNGKK+ AFVP+DGCLN+
Sbjct:   41 SPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNF 95

HSP 2 Score: 38.891 bits (89), Expect = 3.703e-24
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 1

Query:   76 GKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            GK RG  + R L+ HRR  RWA+ +Y K  LG  +K
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFK 39

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.703e-24
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2

Query:  185 SHYAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            S + GSSHAKGIVLE +GIE+KQP SAIRKC RVQLIKNGKK+ AFVP+DGCLN+
Sbjct:   41 SPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNF 95

HSP 2 Score: 38.891 bits (89), Expect = 3.703e-24
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 1

Query:   76 GKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            GK RG  + R L+ HRR  RWA+ +Y K  LG  +K
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFK 39

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.064e-23
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 2

Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE IG+EAKQP SAIRKC RVQLIKNGKKI AFVP+DGCLNY
Sbjct:   41 FGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNY 93

HSP 2 Score: 35.8094 bits (81), Expect = 1.064e-23
Identity = 17/37 (45.95%), Postives = 19/37 (51.35%), Query Frame = 1

Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK  G    R L + RR  +W D  Y KSHLG   K
Sbjct:    1 MGKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALK 37

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.051e-23
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 2

Query:  167 LAMNGRSHYAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            L    R+ + G+SHAKG+V E IGIE+KQP SA+RKC RV L KN KKIAAFVP DGCLN+
Sbjct:   34 LGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNF 94

HSP 2 Score: 45.8246 bits (107), Expect = 3.051e-23
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 1

Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWKKP 189
            +GK RG  AGR L  HR+  RWAD  ++K  LG+ W+ P
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNP 41

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.139e-22
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 2

Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHA GIV+  +GIEAKQP SAIRKC RVQL KNGKKI AFVP+DGCLNY
Sbjct:   41 FGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNY 93

HSP 2 Score: 40.4318 bits (93), Expect = 1.139e-22
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 1

Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK  G    R L++HRR  RW DK Y K+H G   K
Sbjct:    1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALK 37

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.350e-20
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 2

Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            +A SSHAKGIVLE IGIEAKQP SAIRKCARVQLIKNGKKIAAFVP+DGCLNY
Sbjct:   40 FACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2

Query:  185 SHYAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            S + GSSHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKK+ AFVP+DGCLN+
Sbjct:   41 SPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNF 95

[Close]

BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.579e-17
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 2

Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            GS  A+GIVLE +G+EAKQP SA+RKC RVQLIKNGK I AF+P DG +N+
Sbjct:   44 GSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNF 94

HSP 2 Score: 29.6462 bits (65), Expect = 7.579e-17
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 1

Query:   88 GRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            G  AGR+LK+ ++R RW+   Y +  LG + K
Sbjct:    7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRK 38

The following BLAST results are available for this feature:

BLAST of FC876875 vs. ExPASy Swiss-Prot

BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75


Match Name	E-value	Identity	Description
RS23_YEAST	3.703e-24	78.18	40S ribosomal protein S23 OS=Saccharomyces cerevis...	[more]
RS23_SACCA	3.703e-24	78.18	40S ribosomal protein S23 OS=Saccharomyces castell...	[more]
RS23_SACBA	3.703e-24	78.18	40S ribosomal protein S23 OS=Saccharomyces bayanus...	[more]
RS23_CANGA	3.703e-24	78.18	40S ribosomal protein S23 OS=Candida glabrata GN=R...	[more]
RS23_CIOIN	1.064e-23	83.02	40S ribosomal protein S23 OS=Ciona intestinalis GN...	[more]
RS12_TETTH	3.051e-23	65.57	40S ribosomal protein S12 OS=Tetrahymena thermophi...	[more]
RS23_DICDI	1.139e-22	75.47	40S ribosomal protein S23 OS=Dictyostelium discoid...	[more]
RS231_ARATH	2.350e-20	90.57	40S ribosomal protein S23-1 OS=Arabidopsis thalian...	[more]
RS23_NEUCR	1.990e-19	78.18	40S ribosomal protein S23 OS=Neurospora crassa GN=...	[more]
RS12_CENSY	7.579e-17	68.63	30S ribosomal protein S12P OS=Cenarchaeum symbiosu...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA