FC876875

Overview
NameFC876875
Unique NameFC876875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.108e-14
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  AKGIV+E +GIEAKQP S IRKC ++QLIKNG++++AF P DG +NY
Sbjct:   41 GAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINY 91          

HSP 2 Score: 25.0238 bits (53), Expect = 1.108e-14
Identity = 9/24 (37.50%), Postives = 14/24 (58.33%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AG+ L   R+  RW+D+ Y +
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKR 27          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.440e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  AKGI +E +GIEAKQP SAIRKC +VQLIKNG++I AF   DG +NY
Sbjct:   41 GAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINY 91          

HSP 2 Score: 27.335 bits (59), Expect = 1.440e-14
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR L  +R++ RW+D+ Y +
Sbjct:    4 GLNAGRKLLENRKKFRWSDRDYKR 27          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.872e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  AKGI +E +GIEAKQP SAIRKC +VQLIKNG++I AF   DG +NY
Sbjct:   41 GAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINY 91          

HSP 2 Score: 26.9498 bits (58), Expect = 1.872e-14
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR L  +R++ RW+D+ Y +
Sbjct:    4 GINAGRKLLENRKKFRWSDRDYKR 27          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.150e-14
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EA++P +A+RKC RVQL+KNGK + AFVP DG LNY
Sbjct:   46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNY 96          

HSP 2 Score: 25.7942 bits (55), Expect = 3.150e-14
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDKSHLG 171
            G  AG  LK  R+R +W D +Y +  LG
Sbjct:    9 GLFAGGKLKRKRKRFKWNDVTYKRKMLG 36          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.093e-14
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EA++P +A+RKC RVQL+KNGK + AFVP DG LNY
Sbjct:   46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNY 96          

HSP 2 Score: 25.409 bits (54), Expect = 4.093e-14
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDKSHLG 171
            G  AG  LK  R+R +W D +Y +  LG
Sbjct:    9 GLFAGGKLKRKRKRFKWNDITYKRKMLG 36          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.337e-14
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIV+E +GIEAKQP SAIRKC RVQLIKNGK+I AF P DG + +
Sbjct:   40 GAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGF 90          

HSP 2 Score: 23.0978 bits (48), Expect = 5.337e-14
Identity = 10/27 (37.04%), Postives = 15/27 (55.56%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDKSHL 168
            G  A + LKS R++ +W D  Y +  L
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSL 29          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.607e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  AKGIVLE +G+EAKQP SAIRKC R+QLIKNG++I AF P DG +N+
Sbjct:   41 GAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.607e-14
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  164 TLAMNGRSH-YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            TL +N ++    GS  A+GIV+E +GIEAKQP SAIRKC RVQLIKNGK+I AF P DG + +
Sbjct:   28 TLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGF 90          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.607e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EAKQP SAIRKC RVQLIKNGK++ AF P DG ++Y
Sbjct:   46 GAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDY 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.935e-14
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF   DG +N+
Sbjct:   41 GAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINF 91          

HSP 2 Score: 25.0238 bits (53), Expect = 6.935e-14
Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = 1
Query:   85 RGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            +G+ A R L    ++ RW+DK+Y +  L  + K
Sbjct:    3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVK 35          
The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS12_PICTO1.108e-1462.7530S ribosomal protein S12P OS=Picrophilus torridus... [more]
RS12_THEVO1.440e-1464.7130S ribosomal protein S12P OS=Thermoplasma volcani... [more]
RS12_THEAC1.872e-1464.7130S ribosomal protein S12P OS=Thermoplasma acidoph... [more]
RS12_PYRAR3.150e-1462.7530S ribosomal protein S12P OS=Pyrobaculum arsenati... [more]
RS12_PYRIL4.093e-1462.7530S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_METTH5.337e-1466.6730S ribosomal protein S12P OS=Methanobacterium the... [more]
RS12_UNCMA5.607e-1466.6730S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_METST5.607e-1460.3230S ribosomal protein S12P OS=Methanosphaera stadt... [more]
RS12_METKA5.607e-1466.6730S ribosomal protein S12P OS=Methanopyrus kandler... [more]
RS12_METB66.935e-1462.7530S ribosomal protein S12P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA
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