FC876875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.970e-13 Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ AKGIVLE I +EAKQP SA+RK RVQLIKNGK + AF P DG +N+ Sbjct: 46 GAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINH 96 HSP 2 Score: 25.7942 bits (55), Expect = 1.970e-13 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 88 GRGAGRMLKSHRRRPRWADKSYDK 159 G AGR LK R++ RW+D Y + Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKR 32
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.783e-13 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIV+E +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG + + Sbjct: 40 GAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGF 90
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++ Sbjct: 41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF P DG +N+ Sbjct: 41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++ Sbjct: 41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++ Sbjct: 41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++ Sbjct: 41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.319e-13 Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE I +EAKQP SA+RK RVQLIKNGK + AF P DG +N+ Sbjct: 46 GAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINH 96 HSP 2 Score: 25.7942 bits (55), Expect = 4.319e-13 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 88 GRGAGRMLKSHRRRPRWADKSYDK 159 G AGR LK R++ RW+D Y + Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKR 32
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13 Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +G+EAKQP SAIRKC R+QLIKNG+++ AF P DG +N+ Sbjct: 41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13 Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +G+EAKQP SAIRKC R+QLIKNG+++ AF P DG +N+ Sbjct: 41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNF 91 The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bpback to top |