FC876875

Overview
NameFC876875
Unique NameFC876875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.970e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  AKGIVLE I +EAKQP SA+RK  RVQLIKNGK + AF P DG +N+
Sbjct:   46 GAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINH 96          

HSP 2 Score: 25.7942 bits (55), Expect = 1.970e-13
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR LK  R++ RW+D  Y +
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKR 32          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.783e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIV+E +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG + +
Sbjct:   40 GAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGF 90          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++
Sbjct:   41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF P DG +N+
Sbjct:   41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++
Sbjct:   41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++
Sbjct:   41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +GIEAKQP SAIRKC RVQLIKNGK++ AF P DG +++
Sbjct:   41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.319e-13
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE I +EAKQP SA+RK  RVQLIKNGK + AF P DG +N+
Sbjct:   46 GAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINH 96          

HSP 2 Score: 25.7942 bits (55), Expect = 4.319e-13
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR LK  R++ RW+D  Y +
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKR 32          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +G+EAKQP SAIRKC R+QLIKNG+++ AF P DG +N+
Sbjct:   41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +G+EAKQP SAIRKC R+QLIKNG+++ AF P DG +N+
Sbjct:   41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNF 91          
The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS12_THECE1.970e-1364.7130S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_METS32.783e-1364.7130S ribosomal protein S12P OS=Methanobrevibacter s... [more]
RS12_NATPD3.635e-1364.7130S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_METAC3.635e-1362.7530S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS12_HALWD3.635e-1364.7130S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALSA3.635e-1364.7130S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_HALMA3.635e-1364.7130S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS12_PYRKO4.319e-1362.7530S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_METMA4.747e-1360.7830S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METBF4.747e-1360.7830S ribosomal protein S12P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA
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