FC876875

Overview
NameFC876875
Unique NameFC876875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EA+QP SA+RKC RVQL KNGK + AFVP DG +NY
Sbjct:   46 GAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINY 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EA++P +A+RKC RVQL+KNGK + AFVP DG LNY
Sbjct:   46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNY 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EAKQP SAIRKC R+QLIKNG+++ AF P DG + +
Sbjct:   41 GAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.097e-13
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EA++P +A+RKC RVQL+KNGK + AFVP DG LNY
Sbjct:   46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNY 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.097e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  194 AGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            +G+   +GIVLE +G+EAKQP SAIRKC R+QLIKNG++  AF P DG +N+
Sbjct:   40 SGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +GIEAKQP SAIRKC RVQLIKNG+++ AF P DG +++
Sbjct:   41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.230e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE I +EAKQP S +RK  RVQLIKNGK + AF P DG +N+
Sbjct:   46 GAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINF 96          

HSP 2 Score: 25.7942 bits (55), Expect = 1.230e-12
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR LK  R++ RW+D  Y +
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKR 32          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE IG+EAKQP SAIRKC RVQLIKNG++++AF   DG +N+
Sbjct:   41 GAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLN 346
            G+  A+GIVLE +G+EA++P SA+RKC RVQL+KNGK + AFVP DG LN
Sbjct:   46 GAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLN 95          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.804e-12
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE IGIEA+QP SAIRK  RVQLIKNG++I AF P DG +N+
Sbjct:   41 GAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINF 91          
The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS12_STAMF6.200e-1364.7130S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_PYRAE6.200e-1362.7530S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_METTP6.200e-1360.7830S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_PYRCJ8.097e-1362.7530S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_METBU8.097e-1359.6230S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_HALMO1.057e-1262.7530S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_PYRHO1.230e-1260.7830S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_METHJ1.381e-1262.7530S ribosomal protein S12P OS=Methanospirillum hun... [more]
RS12_IGNH41.381e-1264.0030S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_ARCFU1.804e-1266.6730S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA
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