FC876875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +G+EA+QP SA+RKC RVQL KNGK + AFVP DG +NY Sbjct: 46 GAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINY 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13 Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +G+EA++P +A+RKC RVQL+KNGK + AFVP DG LNY Sbjct: 46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNY 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13 Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +G+EAKQP SAIRKC R+QLIKNG+++ AF P DG + + Sbjct: 41 GAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.097e-13 Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +G+EA++P +A+RKC RVQL+KNGK + AFVP DG LNY Sbjct: 46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNY 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.097e-13 Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2 Query: 194 AGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 +G+ +GIVLE +G+EAKQP SAIRKC R+QLIKNG++ AF P DG +N+ Sbjct: 40 SGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12 Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +GIEAKQP SAIRKC RVQLIKNG+++ AF P DG +++ Sbjct: 41 GAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 1.230e-12 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE I +EAKQP S +RK RVQLIKNGK + AF P DG +N+ Sbjct: 46 GAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINF 96 HSP 2 Score: 25.7942 bits (55), Expect = 1.230e-12 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 88 GRGAGRMLKSHRRRPRWADKSYDK 159 G AGR LK R++ RW+D Y + Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKR 32
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12 Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE IG+EAKQP SAIRKC RVQLIKNG++++AF DG +N+ Sbjct: 41 GAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12 Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLN 346 G+ A+GIVLE +G+EA++P SA+RKC RVQL+KNGK + AFVP DG LN Sbjct: 46 GAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLN 95
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 1.804e-12 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE IGIEA+QP SAIRK RVQLIKNG++I AF P DG +N+ Sbjct: 41 GAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINF 91 The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bpback to top |