FC876875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF DG +N+ Sbjct: 41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.695e-12 Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIV+E +G+EAKQP SAIRKC RVQLIKNG+ + AF P + +N+ Sbjct: 46 GAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINF 96 HSP 2 Score: 24.6386 bits (52), Expect = 2.695e-12 Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 85 RGRGAGRMLKSHRRRPRWADKSY 153 RG AGR L+ R+ RW D +Y Sbjct: 8 RGEFAGRKLRLKRKWCRWHDYNY 30
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12 Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +GIE++QP SA+RKC RVQL++NG+ + AFVP DG +N+ Sbjct: 46 GAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNF 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12 Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCL 343 G+ A+GIVLE +G+EA+QP SA+RKC RVQLIKNG+ + AFVP DG L Sbjct: 46 GAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGL 94
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.905e-12 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE I +EAKQP S +RK RVQLIKNGK + AF P DG + + Sbjct: 46 GAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKF 96 HSP 2 Score: 25.7942 bits (55), Expect = 5.905e-12 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 88 GRGAGRMLKSHRRRPRWADKSYDK 159 G AGR LK R++ RW+D Y + Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKR 32
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.905e-12 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE I +EAKQP S +RK RVQLIKNGK + AF P DG + + Sbjct: 46 GAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKF 96 HSP 2 Score: 25.7942 bits (55), Expect = 5.905e-12 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 88 GRGAGRMLKSHRRRPRWADKSYDK 159 G AGR LK R++ RW+D Y + Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKR 32
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.854e-12 Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCL 343 G+ A+GIV+E +GIE++QP SA+RKC RVQL+KNGK + AF+P DG L Sbjct: 46 GAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGAL 94
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +G+EA+QP SA+RKC RVQL+KN K + AFVP DG + Y Sbjct: 46 GAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILY 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11 Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+GIVLE +GIE++QP SA+RK RVQL+KNG+ + AFVP DG +N+ Sbjct: 46 GAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNF 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11 Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIV+E +G+EAKQP SAIRKC RVQLIKNG+++ AF P + +N+ Sbjct: 46 GAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINF 96 The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bpback to top |