FC876875

Overview
NameFC876875
Unique NameFC876875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF   DG +N+
Sbjct:   41 GAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.695e-12
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIV+E +G+EAKQP SAIRKC RVQLIKNG+ + AF P +  +N+
Sbjct:   46 GAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINF 96          

HSP 2 Score: 24.6386 bits (52), Expect = 2.695e-12
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1
Query:   85 RGRGAGRMLKSHRRRPRWADKSY 153
            RG  AGR L+  R+  RW D +Y
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNY 30          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +GIE++QP SA+RKC RVQL++NG+ + AFVP DG +N+
Sbjct:   46 GAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNF 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCL 343
            G+  A+GIVLE +G+EA+QP SA+RKC RVQLIKNG+ + AFVP DG L
Sbjct:   46 GAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGL 94          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.905e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE I +EAKQP S +RK  RVQLIKNGK + AF P DG + +
Sbjct:   46 GAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKF 96          

HSP 2 Score: 25.7942 bits (55), Expect = 5.905e-12
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR LK  R++ RW+D  Y +
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKR 32          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.905e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE I +EAKQP S +RK  RVQLIKNGK + AF P DG + +
Sbjct:   46 GAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKF 96          

HSP 2 Score: 25.7942 bits (55), Expect = 5.905e-12
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:   88 GRGAGRMLKSHRRRPRWADKSYDK 159
            G  AGR LK  R++ RW+D  Y +
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKR 32          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.854e-12
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCL 343
            G+  A+GIV+E +GIE++QP SA+RKC RVQL+KNGK + AF+P DG L
Sbjct:   46 GAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGAL 94          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +G+EA+QP SA+RKC RVQL+KN K + AFVP DG + Y
Sbjct:   46 GAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILY 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+GIVLE +GIE++QP SA+RK  RVQL+KNG+ + AFVP DG +N+
Sbjct:   46 GAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNF 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIV+E +G+EAKQP SAIRKC RVQLIKNG+++ AF P +  +N+
Sbjct:   46 GAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINF 96          
The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS12_METMJ2.356e-1260.7830S ribosomal protein S12P OS=Methanoculleus maris... [more]
RS12_METJA2.695e-1258.8230S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_SULSO4.018e-1258.8230S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_HYPBU5.248e-1265.3130S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_PYRFU5.905e-1258.8230S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB5.905e-1258.8230S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]
RS12_THEPD6.854e-1261.2230S ribosomal protein S12P OS=Thermofilum pendens ... [more]
RS12_AERPE1.994e-1160.7830S ribosomal protein S12P OS=Aeropyrum pernix GN=... [more]
RS12_SULAC2.605e-1158.8230S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_METMP2.605e-1156.8630S ribosomal protein S12P OS=Methanococcus maripa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA
back to top