FC876875

Overview
NameFC876875
Unique NameFC876875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10418 contig Ccv1_Contig10418:1..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   + IVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF   DG +N+
Sbjct:   41 GAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINF 91          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.832e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIV+E +G+EAKQP SAIRKC RVQLIKNG+++ AF P +  +N+
Sbjct:   46 GAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINF 96          

HSP 2 Score: 21.557 bits (44), Expect = 2.832e-11
Identity = 10/23 (43.48%), Postives = 11/23 (47.83%), Query Frame = 1
Query:   85 RGRGAGRMLKSHRRRPRWADKSY 153
            +G  AGR L   RR  RW    Y
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKY 30          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+  A+G+VLE +GIE++QP SA+RK  RVQL+KNG+ + AFVP DG +N+
Sbjct:   46 GAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNF 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIV+E +G+EAKQP SAIRKC RVQLIKNG+++ AF P +  +N+
Sbjct:   46 GAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINF 96          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.775e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            G+   +GIV+E +G+EAKQP SAIRKC +VQLIKNG+ + AF P +  +N+
Sbjct:   46 GAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINF 96          

HSP 2 Score: 23.0978 bits (48), Expect = 4.775e-11
Identity = 11/29 (37.93%), Postives = 13/29 (44.83%), Query Frame = 1
Query:   85 RGRGAGRMLKSHRRRPRWADKSYDKSHLG 171
            +G  AGR L   R+  RW    Y    LG
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELG 36          
The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS12_METLZ2.605e-1158.8230S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_METM72.832e-1156.8630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_SULTO3.402e-1156.8630S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_METM53.402e-1156.8630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METVS4.775e-1154.9030S ribosomal protein S12P OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA
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