FC876875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11 Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ + IVLE +G+EAKQP SAIRKC RVQLIKNG+++ AF DG +N+ Sbjct: 41 GAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINF 91
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.832e-11 Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIV+E +G+EAKQP SAIRKC RVQLIKNG+++ AF P + +N+ Sbjct: 46 GAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINF 96 HSP 2 Score: 21.557 bits (44), Expect = 2.832e-11 Identity = 10/23 (43.48%), Postives = 11/23 (47.83%), Query Frame = 1 Query: 85 RGRGAGRMLKSHRRRPRWADKSY 153 +G AGR L RR RW Y Sbjct: 8 KGEFAGRKLLLKRRASRWHHYKY 30
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11 Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ A+G+VLE +GIE++QP SA+RK RVQL+KNG+ + AFVP DG +N+ Sbjct: 46 GAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNF 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11 Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIV+E +G+EAKQP SAIRKC RVQLIKNG+++ AF P + +N+ Sbjct: 46 GAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINF 96
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 4.775e-11 Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 2 Query: 197 GSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349 G+ +GIV+E +G+EAKQP SAIRKC +VQLIKNG+ + AF P + +N+ Sbjct: 46 GAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINF 96 HSP 2 Score: 23.0978 bits (48), Expect = 4.775e-11 Identity = 11/29 (37.93%), Postives = 13/29 (44.83%), Query Frame = 1 Query: 85 RGRGAGRMLKSHRRRPRWADKSYDKSHLG 171 +G AGR L R+ RW Y LG Sbjct: 8 KGEFAGRKLLLKRKATRWQHYKYVNRELG 36 The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bpback to top |