FC876877

Overview
NameFC876877
Unique NameFC876877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LYVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L++   + L EALCGFQ  ++ LD R ++I S+PG+I+K G  K + NEGMP ++RP+ KGRL I+F V FPE G LSPD+   LE +LP R        E D+ ++V + D + ++E RR     + EAY++ +      VQC
Sbjct:  258 LFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR---HYNGEAYEDDEHHPRGGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LYVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L++   + L EALCGFQ  ++ LD R ++I S+PG+I+K G  K + NEGMP ++RP+ KGRL I+F V FPE G LSPD+   LE +LP R        E D+ ++V + D + ++E RR     + EAY++ +      VQC
Sbjct:  257 LFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR---HYNGEAYEDDEHHPRGGVQC 393          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LYVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L++   + L EALCGFQ  ++ LD R ++I S+PG+I+K G  K + NEGMP ++RP+ KGRL I+F V FPE G LSPD+   LE +LP R        E D+ ++V + D + ++E RR     + EAY++ +      VQC
Sbjct:  258 LFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR---HYNGEAYEDDEHHPRGGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LYVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L++   + L EALCGFQ  ++ LD R ++I S+PG+I+K G  K + NEGMP ++RP+ KGRL I+F V FPE G LSPD+   LE +LP R        E D+ ++V + D + ++E RR     + EAY++ +      VQC
Sbjct:  258 LFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR---HYNGEAYEDDEHHPRGGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LYVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L++   + L EALCGFQ  ++ LD R ++I S+PG+I+K G  K + NEGMP ++RP+ KGRL I+F V FPE G LSPD+   LE +LP R        E D+ ++V + D + ++E RR     + EAY++ +      VQC
Sbjct:  258 LFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR---HYNGEAYEDDEHHPRGGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LYVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L++   + L EALCGFQ  ++ LD R ++I S+PG+I+K G  K + NEGMP ++RP+ KGRL I+F + FPE G LSPD+   LE +LP R        E D+ ++V + D + ++E RR     + EAY++ +      VQC
Sbjct:  258 LFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR---HYNGEAYEDDEHHPRGGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   26 LTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L+EALCGF+  +  LD R L+I S  GE+IK G  K I NEGMP ++ P  KG + IQF V FPE   LS ++   LE++LPPR    ++    DD ++V + + N +E+     ++QH+EAY+E DE     VQC
Sbjct:  267 LSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRIT----DDMDQVELKEFNPNEQ----SWRQHREAYEEDDEEPRAGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 54/136 (39.71%), Postives = 82/136 (60.29%), Query Frame = 2
Query:   26 LTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQC 433
            L+EALCGF+  +  LD R L+I S  GE+IK G  + + +EGMP ++ P  KG L IQF V FPE   LS ++   LE++LPPR    ++    DD ++V + +   +E+     ++QH+EAY+E ++     VQC
Sbjct:  267 LSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRIT----DDMDQVELKEFCPNEQ----NWRQHREAYEEDEDGPQAGVQC 394          
BLAST of FC876877 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 57/150 (38.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:    5 YVDHTLILTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINNEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVLPPRPGKNL-SDMELDDCEEVTM---HDVNIDEEMRRKRYQQHQEAYDEHDEPAMPRVQCAQQ 442
            Y  H  +LT AL G Q  + HLD R L I   PGE I+P + K +  +GM   QR    G LYI+F+V+FPE    +P+Q   LE  LPPR  ++   +   ++C   T+     V ID  +         E  DE +E   P VQCAQQ
Sbjct:  262 YEAHVDLLT-ALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGMLS-QRHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPRKIESAPKNAHTEECVLATVDPTEKVRIDNNVDPTTATSMDE--DEDEEGGHPGVQCAQQ 407          
The following BLAST results are available for this feature:
BLAST of FC876877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DNJA1_RAT8.880e-2441.67DnaJ homolog subfamily A member 1 OS=Rattus norveg... [more]
DNJA1_PONAB8.880e-2441.67DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_MOUSE8.880e-2441.67DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
DNJA1_HUMAN8.880e-2441.67DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNJA1_BOVIN8.880e-2441.67DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNAJ1_CERAE1.160e-2340.97DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA4_MOUSE3.731e-2243.38DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN3.861e-1939.71DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
MAS5_SCHPO1.983e-1538.00Mitochondrial protein import protein mas5 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG12RM1 EHR Citrus clementina cDNA clone KN0AAN1CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876877 ID=FC876877; Name=FC876877; organism=Citrus clementina; type=EST; length=713bp
TCTTTATGTTGATCACACCCTCATTTTGACTGAAGCTCTGTGTGGGTTTC
AATTTGCCTTAACCCATCTTGATGGGAGGCAGCTACTGATCAAATCAAAT
CCTGGGGAGATCATTAAGCCTGGTCAATACAAAGCAATCAACAATGAGGG
AATGCCGCATCACCAAAGGCCCTTTATGAAAGGCAGGCTTTACATTCAAT
TCAATGTAGAATTTCCGGAATGTGGAATCCTTTCTCCTGATCAGTGCCGG
ACTTTAGAGAGTGTACTACCTCCGAGGCCAGGCAAGAACCTGTCTGACAT
GGAGCTGGATGATTGTGAGGAGGTCACCATGCATGATGTTAACATTGATG
AAGAGATGAGGCGTAAACGGTATCAACAGCATCAAGAGGCATATGATGAA
CATGATGAACCAGCAATGCCAAGAGTCCAGTGTGCTCAGCAATGAGGCAA
ATTCAATTTTGCCTTTCCTGGTCCCCTTGCCTATCAGAGGCAATGAGCAT
TTTCAATTTGGCATCTAGTATGTTTTTTTTACCGCTGCATGATTTTTGTG
CTAATTAATATTATAAGCAAGCAGTAGCAGTTATTTACCAGGCAGAAGGT
GGATAGTATTTATATACACACACATATGCATATGTATATGCAGCAGCGGA
TCAGATGCTTATGTCATTTAAATTGGATTTTTTGATGTATTGCATAAATT
CAGATGCTTGTTG
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