FC876888

Overview
NameFC876888
Unique NameFC876888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADTDKIQALPTIQITE-EHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.080e-14
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  183 GLDTIITQLLNQFENTGPPPADTEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 268          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.080e-14
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC ++Y +GE  R++PC H FH  CI  WL    SCPVCR
Sbjct:  185 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 270          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.080e-14
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDE 655
            G + L+ ++   +G+    G PPA K  + ++P++ V + E+  +G EC VC E+Y V E  R++PC H FH++CI  WL +  +CPVCR  +  E+    ++  E
Sbjct:  181 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTE 285          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC ++Y +GE  R++PC H FH  CI  WL    SCPVCR
Sbjct:  188 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 273          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDE 655
            G + L+ ++   +G+    G PPA K  + ++P++ V + E+   G EC VC E+Y V E  R++PC H FH++CI  WL +  +CPVCR  +  E+     +  E
Sbjct:  182 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSE 286          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 619
            PPASK S++A+P I V E +  A+G E  C +C  EY  GEVA E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  502 PPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 619
            PPASK S++A+P I V E +  A+G E  C +C  EY  GEVA E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  567 PPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGG--ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKM----PVEEEESGNKRDERRR 664
            P ASK ++  +P  ++ +S+E   GG  EC VC E  E G+  R +PCKH+FH  CI  WL    SCP+CRY++    PV EE    ++DE  R
Sbjct:   44 PEASKRAILELPVHEIVKSDE---GGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELRRFRQDEANR 134          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  410 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            +KA +E +PS +      ++    CVVC  ++EV ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  274 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339          
The following BLAST results are available for this feature:
BLAST of FC876888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
R126B_XENLA8.270e-1543.68RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN126_XENTR1.080e-1443.68RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN1.080e-1443.68RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN115_HUMAN1.080e-1434.91RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN126_BOVIN1.411e-1443.68RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN115_MOUSE2.406e-1434.91RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
PJA1_MOUSE3.143e-1450.67E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN3.143e-1450.67E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]
RN181_DROME5.017e-1242.55E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
RNF44_RAT6.553e-1239.39RING finger protein 44 OS=Rattus norvegicus GN=Rnf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BD12RM1 EHR Citrus clementina cDNA clone KN0AAN3BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876888 ID=FC876888; Name=FC876888; organism=Citrus clementina; type=EST; length=749bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTTT
CATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTGT
TTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGAG
ATGAGCGAAGGAGAGAAATTTGGGTTAGTTTTTCAATCAGTGGTGGTGGT
AGAAGAAGTGGTGAGAATTCAAATCAAAACGAAAGTACTTCTCCTTCAA
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