FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.057e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  252 ESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 340
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.057e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  252 ESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 340
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_HUMAN (ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 6.057e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  252 ESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 340
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CHICK (ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.057e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  257 ESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 345
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BOVIN (ATP synthase subunit beta, mitochondrial OS=Bos taurus GN=ATP5B PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.057e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  252 ESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 340
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.762e-36
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E GVI L DK   SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  229 EGGVISLKDKT--SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 317
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CYPCA (ATP synthase subunit beta, mitochondrial OS=Cyprinus carpio GN=atp5b PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.762e-36
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L  K   SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  242 ESGVINL--KDTTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 330
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SCHPO (ATP synthase subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=atp2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.006e-36
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVIKL   + +SK ALV+GQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  249 ETGVIKL---EGESKAALVFGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 336
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.926e-36
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARVGLTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVGLTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OLICO (ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.926e-36
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARVGLTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVGLTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RAT6.057e-3787.91ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_MOUSE6.057e-3787.91ATP synthase subunit beta, mitochondrial OS=Mus mu... [more]
ATPB_HUMAN6.057e-3787.91ATP synthase subunit beta, mitochondrial OS=Homo s... [more]
ATPB_CHICK6.057e-3787.91ATP synthase subunit beta, mitochondrial OS=Gallus... [more]
ATPB_BOVIN6.057e-3787.91ATP synthase subunit beta, mitochondrial OS=Bos ta... [more]
ATPB_DROME1.762e-3686.81ATP synthase subunit beta, mitochondrial OS=Drosop... [more]
ATPB_CYPCA1.762e-3686.81ATP synthase subunit beta, mitochondrial OS=Cyprin... [more]
ATPB_SCHPO3.006e-3684.62ATP synthase subunit beta, mitochondrial OS=Schizo... [more]
ATPB_RHOPA3.926e-3685.71ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_OLICO3.926e-3685.71ATP synthase subunit beta OS=Oligotropha carboxido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
back to top