FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_NOVAD (ATP synthase subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            SK ALV+GQMNEPPGARARV L+GLT+AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  217 SKVALVFGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 294          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CLOD6 (ATP synthase subunit beta OS=Clostridium difficile (strain 630) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI        +K ALV+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLF+DNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  198 ESGVI--------NKTALVFGQMNEPPGARMRVALTGLTMAEHFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 280          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACWK (ATP synthase subunit beta OS=Bacillus weihenstephanensis (strain KBAB4) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACHK (ATP synthase subunit beta OS=Bacillus thuringiensis subsp. konkukian GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACCZ (ATP synthase subunit beta OS=Bacillus cereus (strain ZK / E33L) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACCR (ATP synthase subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACCN (ATP synthase subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  197 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 279          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACC4 (ATP synthase subunit beta OS=Bacillus cereus (strain B4264) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACC3 (ATP synthase subunit beta OS=Bacillus cereus (strain 03BB102) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACC2 (ATP synthase subunit beta OS=Bacillus cereus (strain G9842) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_NOVAD1.544e-3285.90ATP synthase subunit beta OS=Novosphingobium aroma... [more]
ATPB_CLOD61.544e-3276.92ATP synthase subunit beta OS=Clostridium difficile... [more]
ATPB_BACWK1.544e-3276.92ATP synthase subunit beta OS=Bacillus weihenstepha... [more]
ATPB_BACHK1.544e-3276.92ATP synthase subunit beta OS=Bacillus thuringiensi... [more]
ATPB_BACCZ1.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACCR1.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACCN1.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus subsp... [more]
ATPB_BACC41.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACC31.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACC21.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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