FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACC0 (ATP synthase subunit beta OS=Bacillus cereus (strain AH820) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACAN (ATP synthase subunit beta OS=Bacillus anthracis GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACAH (ATP synthase subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACAC (ATP synthase subunit beta OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACAA (ATP synthase subunit beta OS=Bacillus anthracis (strain A0248) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 284
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SYNY3 (ATP synthase subunit beta OS=Synechocystis sp. (strain PCC 6803) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/91 (78.02%), Postives = 76/91 (83.52%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI   DK  +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  208 ESNVIN-ADKPEESKIALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 297
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRZT (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRZP (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain P1031) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRZJ (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain JJA) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRU0 (ATP synthase subunit beta OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BACC01.544e-3276.92ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACAN1.544e-3276.92ATP synthase subunit beta OS=Bacillus anthracis GN... [more]
ATPB_BACAH1.544e-3276.92ATP synthase subunit beta OS=Bacillus thuringiensi... [more]
ATPB_BACAC1.544e-3276.92ATP synthase subunit beta OS=Bacillus anthracis (s... [more]
ATPB_BACAA1.544e-3276.92ATP synthase subunit beta OS=Bacillus anthracis (s... [more]
ATPB_SYNY32.016e-3278.02ATP synthase subunit beta OS=Synechocystis sp. (st... [more]
ATPB_STRZT2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRZP2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRZJ2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRU02.016e-3276.92ATP synthase subunit beta OS=Streptococcus uberis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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