FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRTD (ATP synthase subunit beta OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRT2 (ATP synthase subunit beta OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRT1 (ATP synthase subunit beta OS=Streptococcus thermophilus (strain CNRZ 1066) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRSY (ATP synthase subunit beta OS=Streptococcus suis (strain 05ZYH33) GN=atpD PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRSV (ATP synthase subunit beta OS=Streptococcus sanguinis (strain SK36) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRS7 (ATP synthase subunit beta OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRS2 (ATP synthase subunit beta OS=Streptococcus suis (strain 98HAH33) GN=atpD PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRR6 (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=atpD PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPS (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain CGSP14) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPN (ATP synthase subunit beta OS=Streptococcus pneumoniae GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_STRTD2.016e-3276.92ATP synthase subunit beta OS=Streptococcus thermop... [more]
ATPB_STRT22.016e-3276.92ATP synthase subunit beta OS=Streptococcus thermop... [more]
ATPB_STRT12.016e-3276.92ATP synthase subunit beta OS=Streptococcus thermop... [more]
ATPB_STRSY2.016e-3276.92ATP synthase subunit beta OS=Streptococcus suis (s... [more]
ATPB_STRSV2.016e-3276.92ATP synthase subunit beta OS=Streptococcus sanguin... [more]
ATPB_STRS72.016e-3276.92ATP synthase subunit beta OS=Streptococcus equi su... [more]
ATPB_STRS22.016e-3276.92ATP synthase subunit beta OS=Streptococcus suis (s... [more]
ATPB_STRR62.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRPS2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRPN2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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