FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPM (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M28 GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPJ (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPI (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPG (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPF (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPD (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPC (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRPB (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRP8 (ATP synthase subunit beta OS=Streptococcus pyogenes serotype M18 GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
[Close]
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STRP7 (ATP synthase subunit beta OS=Streptococcus pneumoniae (strain 70585) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_STRPM2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRPJ2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRPI2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]
ATPB_STRPG2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRPF2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRPD2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRPC2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRPB2.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRP82.016e-3276.92ATP synthase subunit beta OS=Streptococcus pyogene... [more]
ATPB_STRP72.016e-3276.92ATP synthase subunit beta OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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