FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            SKCALVYGQMNEPPGARARV L+GLT+AE FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G
Sbjct:  277 SKCALVYGQMNEPPGARARVALSGLTIAESFRD-EGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG 353          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            SKCALVYGQMNEPPGARARV L+GLT+AE FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G
Sbjct:  271 SKCALVYGQMNEPPGARARVALSGLTIAESFRD-EGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG 347          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            SKCALVYGQMNEPPGARARV L+GLT+AE FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G
Sbjct:  266 SKCALVYGQMNEPPGARARVALSGLTIAESFRD-EGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG 342          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ODOSI (ATP synthase subunit beta, chloroplastic OS=Odontella sinensis GN=atpB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.633e-32
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 ESGVINENNFK-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 291          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LEUCK (ATP synthase subunit beta OS=Leuconostoc citreum (strain KM20) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.633e-32
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV+K        + A+VYGQMNEPPGAR RV LTGLT+AE+FRD+EG+DVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  199 ESGVLK--------QTAMVYGQMNEPPGARMRVALTGLTMAENFRDSEGKDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LACS1 (ATP synthase subunit beta OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.633e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV++        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  199 ESGVLE--------KTAMVFGQMNEPPGARMRVALTGLTLAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ANAVT (ATP synthase subunit beta OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.633e-32
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D   +SK ALVYGQMNEPPGAR RVGL+GLT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  208 ESGVINK-DNLNESKIALVYGQMNEPPGARMRVGLSGLTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 297          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ANADE (ATP synthase subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.633e-32
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVI   D  + S+C LVYGQMNEPPGARARV L+ LTVAE+FRD E +D+LLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTL+T++G
Sbjct:  207 EAGVINKDDL-SKSQCVLVYGQMNEPPGARARVALSALTVAEYFRDVENRDMLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLSTEMG 296          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_THEEB (ATP synthase subunit beta OS=Thermosynechococcus elongatus (strain BP-1) GN=atpD PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.439e-32
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D  + SK ALVYGQMNEPPGAR RVGL+GLT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  208 ESGVIDKDDP-SKSKIALVYGQMNEPPGARMRVGLSGLTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 297          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_STAS1 (ATP synthase subunit beta OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=atpD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.439e-32
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV L+GLT+AEHFRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 DSGVIK--------KTAMVFGQMNEPPGARMRVALSGLTMAEHFRDVQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BART12.016e-3287.18ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB_BARQU2.016e-3287.18ATP synthase subunit beta OS=Bartonella quintana G... [more]
ATPB_BARHE2.016e-3287.18ATP synthase subunit beta OS=Bartonella henselae G... [more]
ATPB_ODOSI2.633e-3278.02ATP synthase subunit beta, chloroplastic OS=Odonte... [more]
ATPB_LEUCK2.633e-3276.92ATP synthase subunit beta OS=Leuconostoc citreum (... [more]
ATPB_LACS12.633e-3276.92ATP synthase subunit beta OS=Lactobacillus salivar... [more]
ATPB_ANAVT2.633e-3278.02ATP synthase subunit beta OS=Anabaena variabilis (... [more]
ATPB_ANADE2.633e-3275.82ATP synthase subunit beta OS=Anaeromyxobacter deha... [more]
ATPB_THEEB3.439e-3278.02ATP synthase subunit beta OS=Thermosynechococcus e... [more]
ATPB_STAS13.439e-3275.82ATP synthase subunit beta OS=Staphylococcus saprop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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