FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 6.696e-36
Identity = 76/91 (83.52%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVI L   + DSK ALV+GQMNEPPGARARV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  230 ETGVINL---EGDSKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 317          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_HEMPU (ATP synthase subunit beta, mitochondrial OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.746e-36
Identity = 78/91 (85.71%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E GVI L D    SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  247 EGGVISLKDDT--SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 335          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_YEAST (ATP synthase subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.948e-35
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  236 ETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 323          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSA (ATP synthase subunit beta OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.323e-35
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKL      SK ALVYGQMNEPPGARARV L+GLTVAE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 ESGVIKLDGP--GSKVALVYGQMNEPPGARARVALSGLTVAEYFRDVEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.323e-35
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 3
Query:    3 ESGVIKLGDKQAD-SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++GVIKLG+   + SK ALVYGQMNEPPGAR RVGL+GLT+AE+FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 DAGVIKLGEGTTEGSKVALVYGQMNEPPGARMRVGLSGLTMAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.340e-35
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 3
Query:    3 ESGVIKLGDKQAD-SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++GVIKLG+   + SK ALVYGQMNEPPGARARV L+GL++AE+FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 DAGVIKLGENTTEGSKVALVYGQMNEPPGARARVALSGLSIAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CAEEL (ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.340e-35
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E GVI L  K  +SK +LVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  261 EGGVIDLKGK--NSKVSLVYGQMNEPPGARARVCLTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 349          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.669e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARV L+GLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVALSGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.669e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARV L+GLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVALSGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.669e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARV L+GLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVALSGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_KLULA6.696e-3683.52ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]
ATPB_HEMPU8.746e-3685.71ATP synthase subunit beta, mitochondrial OS=Hemice... [more]
ATPB_YEAST1.948e-3582.42ATP synthase subunit beta, mitochondrial OS=Saccha... [more]
ATPB_MAGSA3.323e-3583.52ATP synthase subunit beta OS=Magnetospirillum magn... [more]
ATPB_ACICJ3.323e-3579.35ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB_GRABC4.340e-3578.26ATP synthase subunit beta OS=Granulibacter bethesd... [more]
ATPB_CAEEL4.340e-3584.62ATP synthase subunit beta, mitochondrial OS=Caenor... [more]
ATPB_RHOPS5.669e-3583.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOPB5.669e-3583.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP55.669e-3583.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
back to top