FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_NEUCR (ATP synthase subunit beta, mitochondrial OS=Neurospora crassa GN=atp-2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.649e-34
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+ VI+L     DSK ALV+GQMNEPPGARARV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLA D+G
Sbjct:  241 ETSVIQL---DGDSKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMG 328          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHOCA (ATP synthase subunit beta OS=Rhodobacter capsulatus GN=atpD PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 2.154e-34
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L +K  +SK ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  196 ESGVINL-EKLEESKVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 285          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.154e-34
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARVGLTGLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  201 ESGVNKKGGGEG-SKAALVYGQMNEPPGARARVGLTGLTVAEYFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.154e-34
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARVGLTGLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  243 ESGVNKKGGGEG-SKAALVYGQMNEPPGARARVGLTGLTVAEYFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 331          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_AZOC5 (ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.154e-34
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 3
Query:   36 ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            A SKCALVYGQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  212 AGSKCALVYGQMNEPPGARARVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 290          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHIEC (ATP synthase subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.813e-34
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  201 ESGVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHIE6 (ATP synthase subunit beta OS=Rhizobium etli (strain CIAT 652) GN=atpD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.813e-34
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  201 ESGVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_GLUDA (ATP synthase subunit beta OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpD PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.674e-34
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 3
Query:    3 ESGVIKLGDKQAD-SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++GVIKLG+   + SK ALVYGQMNEPPGARAR+ L+GL++AE+FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLAT++G
Sbjct:  215 DAGVIKLGEDTTEGSKVALVYGQMNEPPGARARIALSGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMG 306          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.799e-34
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K ALVYGQMNEPPGAR RVGLTGLT+AEHFRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  199 ESGVI--------DKTALVYGQMNEPPGARMRVGLTGLTMAEHFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHOBL (ATP synthase subunit beta OS=Rhodopseudomonas blastica GN=atpD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.268e-34
Identity = 73/91 (80.22%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI + D +  SK ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  201 ESGVINIDDLEK-SKVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 290          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_NEUCR1.649e-3481.32ATP synthase subunit beta, mitochondrial OS=Neuros... [more]
ATPB_RHOCA2.154e-3481.32ATP synthase subunit beta OS=Rhodobacter capsulatu... [more]
ATPB_RHILO2.154e-3483.52ATP synthase subunit beta OS=Rhizobium loti GN=atp... [more]
ATPB_MESSB2.154e-3483.52ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB_AZOC52.154e-3490.00ATP synthase subunit beta OS=Azorhizobium caulinod... [more]
ATPB_RHIEC2.813e-3483.52ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB_RHIE62.813e-3483.52ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB_GLUDA3.674e-3476.09ATP synthase subunit beta OS=Gluconacetobacter dia... [more]
ATPB_ALKOO4.799e-3481.32ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_RHOBL6.268e-3480.22ATP synthase subunit beta OS=Rhodopseudomonas blas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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