FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_IPOAQ (ATP synthase subunit beta, chloroplastic OS=Ipomoea aquatica GN=atpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  216 ESGVIN-EENIPESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 305          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV+         K ALVYGQMNEPPGARARV L+ L++AE+FRD EGQ+VLLF+DNIFRFTQA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  203 ESGVL--------DKAALVYGQMNEPPGARARVALSALSIAEYFRDEEGQNVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMG 285          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DRIGR (ATP synthase subunit beta, chloroplastic OS=Drimys granadensis GN=atpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +  A+SK ALV+GQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EENIAESKVALVHGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DESVM (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 65/78 (83.33%), Postives = 69/78 (88.46%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            K AL+YGQMNEPPGARARV LT L  AE+FRD E QDVLLF+DNIFRFTQA SEVSALLGR+PSAVGYQPTL TDLGG
Sbjct:  208 KAALIYGQMNEPPGARARVALTALACAEYFRDIENQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTDLGG 285          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DESOH (ATP synthase subunit beta OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            K AL+YGQM EPPGARARV L+ LT AE+FRD EGQDVL+FIDNIFRFTQA +EVSALLGRIPSAVGYQPTLA DLGG
Sbjct:  209 KAALIYGQMTEPPGARARVALSALTCAEYFRDVEGQDVLIFIDNIFRFTQAGAEVSALLGRIPSAVGYQPTLAVDLGG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CYCTA (ATP synthase subunit beta, chloroplastic OS=Cycas taitungensis GN=atpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  216 ESGVINEQDISG-SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 305          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CYAP7 (ATP synthase subunit beta OS=Cyanothece sp. (strain PCC 7424) GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI   D   DSK ALVYGQMNEPPGAR RVGL+ LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  207 ESKVIN-PDNPEDSKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 296          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CUSJA (ATP synthase subunit beta, plastid OS=Cuscuta japonica GN=atpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  216 ESGVIN-ENNITESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 305          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CLOTH (ATP synthase subunit beta OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 70/91 (76.92%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K ALV+GQMNEPPG+R RVGLTGLT+AE+FRD  GQDVLLFIDNIFRF QA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  199 ESGVIE--------KTALVFGQMNEPPGSRMRVGLTGLTMAEYFRDELGQDVLLFIDNIFRFIQAGSEVSALLGRIPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CHLPD (ATP synthase subunit beta OS=Chlorobium phaeobacteroides (strain DSM 266) GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K ALV+GQMNEPPGARARV LTGL++AE+FRD E +DVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  197 ESGVI--------DKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 279          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_IPOAQ2.229e-3175.82ATP synthase subunit beta, chloroplastic OS=Ipomoe... [more]
ATPB_GEOSL2.229e-3174.73ATP synthase subunit beta OS=Geobacter sulfurreduc... [more]
ATPB_DRIGR2.229e-3175.82ATP synthase subunit beta, chloroplastic OS=Drimys... [more]
ATPB_DESVM2.229e-3183.33ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_DESOH2.229e-3183.33ATP synthase subunit beta OS=Desulfococcus oleovor... [more]
ATPB_CYCTA2.229e-3176.92ATP synthase subunit beta, chloroplastic OS=Cycas ... [more]
ATPB_CYAP72.229e-3176.92ATP synthase subunit beta OS=Cyanothece sp. (strai... [more]
ATPB_CUSJA2.229e-3175.82ATP synthase subunit beta, plastid OS=Cuscuta japo... [more]
ATPB_CLOTH2.229e-3176.92ATP synthase subunit beta OS=Clostridium thermocel... [more]
ATPB_CHLPD2.229e-3175.82ATP synthase subunit beta OS=Chlorobium phaeobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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