FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CHAGL (ATP synthase subunit beta, chloroplastic OS=Chaetosphaeridium globosum GN=atpB PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ES VI   +   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++GG
Sbjct:  216 ESKVIN-EENLGESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGG 306          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACME (ATP synthase subunit beta OS=Bacillus megaterium GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD +GQDVL FIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  204 DSGVIK--------KTAMVFGQMNEPPGARQRVALTGLTMAEYFRDEQGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACHD (ATP synthase subunit beta OS=Bacillus halodurans GN=atpD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 68/91 (74.73%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK        K A+V+GQMNEPPGAR RV L+GLT+AE+FRD +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  204 DSGVIK--------KTAMVFGQMNEPPGARMRVALSGLTMAEYFRDKQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_WHEAT (ATP synthase subunit beta, chloroplastic OS=Triticum aestivum GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_VITVI (ATP synthase subunit beta, chloroplastic OS=Vitis vinifera GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K  ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN--EKNISESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SORBI (ATP synthase subunit beta, chloroplastic OS=Sorghum bicolor GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SACOF (ATP synthase subunit beta, chloroplastic OS=Saccharum officinarum GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SACHY (ATP synthase subunit beta, chloroplastic OS=Saccharum hybrid GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROMS (ATP synthase subunit beta OS=Prochlorococcus marinus (strain AS9601) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVIN-ADDLTQSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROMA (ATP synthase subunit beta OS=Prochlorococcus marinus GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVIN-ADDLTQSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CHAGL2.229e-3175.00ATP synthase subunit beta, chloroplastic OS=Chaeto... [more]
ATPB_BACME2.229e-3174.73ATP synthase subunit beta OS=Bacillus megaterium G... [more]
ATPB_BACHD2.229e-3174.73ATP synthase subunit beta OS=Bacillus halodurans G... [more]
ATPB_WHEAT2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Tritic... [more]
ATPB_VITVI2.911e-3176.09ATP synthase subunit beta, chloroplastic OS=Vitis ... [more]
ATPB_SORBI2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Sorghu... [more]
ATPB_SACOF2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Saccha... [more]
ATPB_SACHY2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Saccha... [more]
ATPB_PROMS2.911e-3174.73ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_PROMA2.911e-3174.73ATP synthase subunit beta OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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