FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROM9 (ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT 9312) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVIN-ADDLTQSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROM2 (ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT 9215) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVIN-ADDLTQSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROM0 (ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT 9301) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVIN-ADDLTQSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PORPU (ATP synthase subunit beta, chloroplastic OS=Porphyra purpurea GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI   D   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESKVIN-EDNLKESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMG 290          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PICAB (ATP synthase subunit beta, chloroplastic OS=Picea abies GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 3
Query:    3 ESGVIKLGDKQ--ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D+Q  ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVL FIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  216 ESGVI---DEQNISESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLSFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMG 305          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_MAIZE (ATP synthase subunit beta, chloroplastic OS=Zea mays GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LOLPR (ATP synthase subunit beta, chloroplastic OS=Lolium perenne GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LACSS (ATP synthase subunit beta OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=atpD PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV++        K A+V+GQMNE PGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  199 ESGVLE--------KTAMVFGQMNESPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_HORVU (ATP synthase subunit beta, chloroplastic OS=Hordeum vulgare GN=atpB PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DICDH (ATP synthase subunit beta, chloroplastic OS=Dictyota dichotoma GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +  ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL T++G
Sbjct:  207 ESGVINESNL-SESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINRQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMG 296          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_PROM92.911e-3174.73ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_PROM22.911e-3174.73ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_PROM02.911e-3174.73ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_PORPU2.911e-3176.92ATP synthase subunit beta, chloroplastic OS=Porphy... [more]
ATPB_PICAB2.911e-3176.34ATP synthase subunit beta, chloroplastic OS=Picea ... [more]
ATPB_MAIZE2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Zea ma... [more]
ATPB_LOLPR2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Lolium... [more]
ATPB_LACSS2.911e-3174.73ATP synthase subunit beta OS=Lactobacillus sakei s... [more]
ATPB_HORVU2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Hordeu... [more]
ATPB_DICDH2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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