FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CHLP8 (ATP synthase subunit beta OS=Chlorobaculum parvum (strain NCIB 8327) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K ALV+GQMNEPPGARARV LTGL++AE+FRD EG+DVLLFIDNIFRFTQA +EVSALLGR+PSAVGYQPTL T++G
Sbjct:  197 ESGVI--------DKTALVFGQMNEPPGARARVALTGLSIAEYFRDEEGRDVLLFIDNIFRFTQAGAEVSALLGRMPSAVGYQPTLGTEMG 279          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BRANA (ATP synthase subunit beta, chloroplastic OS=Brassica napus GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 70/91 (76.92%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +  ADSK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+ ++G
Sbjct:  218 ESGVINELNL-ADSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSAEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BDEBA (ATP synthase subunit beta OS=Bdellovibrio bacteriovorus GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +K +LV+GQMNEPPGARARV LTGLTVAE+FRD E QDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLAT++G
Sbjct:  206 AKTSLVFGQMNEPPGARARVALTGLTVAEYFRDVENQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMG 283          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_AGRST (ATP synthase subunit beta, chloroplastic OS=Agrostis stolonifera GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_AEGCR (ATP synthase subunit beta, chloroplastic OS=Aegilops crassa GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_AEGCO (ATP synthase subunit beta, chloroplastic OS=Aegilops columnaris GN=atpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   + + +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVINEKNIE-ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ACIC5 (ATP synthase subunit beta OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVI + D  + SK AL+YGQM EPPGAR RV LTGLTVAE+FRD EG D LLFIDNIFRFTQA SEVS LLGR+PSAVGYQP LAT++G
Sbjct:  204 EAGVIDIHDF-SKSKAALIYGQMTEPPGARLRVALTGLTVAEYFRDQEGADTLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLATEMG 293          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ACIBL (ATP synthase subunit beta OS=Acidobacteria bacterium (strain Ellin345) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVI  GD  + SK ALVYGQM EPPGAR RV LT LTVAE+FRD EG D LLFIDNIFRFTQA SEVS LLGR+PSAVGYQP LAT++G
Sbjct:  204 EAGVITPGDP-SKSKAALVYGQMTEPPGARLRVALTALTVAEYFRDEEGTDTLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLATEMG 293          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB2_CHLTE (ATP synthase subunit beta 2 OS=Chlorobium tepidum GN=atpD2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.911e-31
Identity = 68/91 (74.73%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K ALV+GQMNEPPGARARV LTGL++AE+FR+ EG+DVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  197 ESGVI--------DKTALVFGQMNEPPGARARVALTGLSIAEYFREEEGRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMG 279          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SYNPW (ATP synthase subunit beta OS=Synechococcus sp. (strain WH7803) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI   D  + SK AL YGQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 DSGVINAEDL-SKSKVALCYGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CHLP82.911e-3174.73ATP synthase subunit beta OS=Chlorobaculum parvum ... [more]
ATPB_BRANA2.911e-3176.92ATP synthase subunit beta, chloroplastic OS=Brassi... [more]
ATPB_BDEBA2.911e-3182.05ATP synthase subunit beta OS=Bdellovibrio bacterio... [more]
ATPB_AGRST2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Agrost... [more]
ATPB_AEGCR2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Aegilo... [more]
ATPB_AEGCO2.911e-3175.82ATP synthase subunit beta, chloroplastic OS=Aegilo... [more]
ATPB_ACIC52.911e-3174.73ATP synthase subunit beta OS=Acidobacterium capsul... [more]
ATPB_ACIBL2.911e-3175.82ATP synthase subunit beta OS=Acidobacteria bacteri... [more]
ATPB2_CHLTE2.911e-3174.73ATP synthase subunit beta 2 OS=Chlorobium tepidum ... [more]
ATPB_SYNPW3.802e-3174.73ATP synthase subunit beta OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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