FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROM5 (ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT 9515) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D  + SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVINAEDL-SQSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OENPA (ATP synthase subunit beta, chloroplastic OS=Oenothera parviflora GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   Q+VLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OENGL (ATP synthase subunit beta, chloroplastic OS=Oenothera glazioviana GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   Q+VLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OENEH (ATP synthase subunit beta, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpB PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   Q+VLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OENBI (ATP synthase subunit beta, chloroplastic OS=Oenothera biennis GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   Q+VLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OENAR (ATP synthase subunit beta, chloroplastic OS=Oenothera argillicola GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   Q+VLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LOBMA (ATP synthase subunit beta, chloroplastic OS=Lobularia maritima GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI   +  A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESKVIN-EENLAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LEMMI (ATP synthase subunit beta, chloroplastic OS=Lemna minor GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN--EKNITESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_IDIAU (ATP synthase subunit beta, chloroplastic OS=Idiospermum australiense GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALV+GQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVHGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CUSRE (ATP synthase subunit beta, plastid OS=Cuscuta reflexa GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  216 ESGVIN--EKNITESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 305          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_PROM53.802e-3174.73ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_OENPA3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENGL3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENEH3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENBI3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENAR3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_LOBMA3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Lobula... [more]
ATPB_LEMMI3.802e-3176.09ATP synthase subunit beta, chloroplastic OS=Lemna ... [more]
ATPB_IDIAU3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Idiosp... [more]
ATPB_CUSRE3.802e-3176.09ATP synthase subunit beta, plastid OS=Cuscuta refl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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