FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CUSEX (ATP synthase subunit beta, plastid OS=Cuscuta exaltata GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  216 ESGVIN--EKNITESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 305          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CINCA (ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALV+GQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVHGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K  +V+GQMNEPPG R RVGLTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  210 KTIMVFGQMNEPPGVRLRVGLTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CALFL (ATP synthase subunit beta, chloroplastic OS=Calycanthus floridus GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALV+GQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVHGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CALFG (ATP synthase subunit beta, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALV+GQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVHGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB3_PELCD (ATP synthase subunit beta 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD3 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K ALVYGQMNEPPGARARV L+ LTVAE+FRD E QDVLLF+DNIFRFTQA SEVSALLGRIPSAVGYQPTL+T++G
Sbjct:  207 KTALVYGQMNEPPGARARVALSALTVAEYFRDQENQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLSTEMG 283          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB1_PELLD (ATP synthase subunit beta 1 OS=Pelodictyon luteolum (strain DSM 273) GN=atpD1 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K ALV+GQMNEPPGARARV LTGL++AE+FRD E +DVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  197 ESGVI--------DKTALVFGQMNEPPGARARVALTGLSIAEYFRDEEHRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 279          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB1_PELCD (ATP synthase subunit beta 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.802e-31
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K ALVYGQMNEPPGARARV L+ LTVAE+FRD E QDVLLF+DNIFRFTQA SEVSALLGRIPSAVGYQPTL+T++G
Sbjct:  207 KTALVYGQMNEPPGARARVALSALTVAEYFRDQENQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLSTEMG 283          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_WOLTR (ATP synthase subunit beta OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=atpD PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 3
Query:    6 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            S VI + + +  S+  LVYGQMNEPPGARARV LT LT+AE+FRD E QDVL F+DNIFRFTQA SE+SALLGR+PSAVGYQPTLATD+G
Sbjct:  199 SNVINVNEHEK-SQAVLVYGQMNEPPGARARVALTALTMAEYFRDHENQDVLFFVDNIFRFTQAGSEISALLGRMPSAVGYQPTLATDMG 287          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROWI (ATP synthase subunit beta, plastid OS=Prototheca wickerhamii GN=atpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESG+I      ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLA+++G
Sbjct:  208 ESGIINEA-LISESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVSSQDVLLFIDNIFRFLQAGSEVSALLGRLPSAVGYQPTLASEMG 297          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CUSEX3.802e-3176.09ATP synthase subunit beta, plastid OS=Cuscuta exal... [more]
ATPB_CINCA3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Cinnam... [more]
ATPB_CARHZ3.802e-3183.12ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_CALFL3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Calyca... [more]
ATPB_CALFG3.802e-3175.82ATP synthase subunit beta, chloroplastic OS=Calyca... [more]
ATPB3_PELCD3.802e-3184.42ATP synthase subunit beta 3 OS=Pelobacter carbinol... [more]
ATPB1_PELLD3.802e-3175.82ATP synthase subunit beta 1 OS=Pelodictyon luteolu... [more]
ATPB1_PELCD3.802e-3184.42ATP synthase subunit beta 1 OS=Pelobacter carbinol... [more]
ATPB_WOLTR4.966e-3173.33ATP synthase subunit beta OS=Wolbachia sp. subsp. ... [more]
ATPB_PROWI4.966e-3174.73ATP synthase subunit beta, plastid OS=Prototheca w... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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