FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PEPNI (ATP synthase subunit beta (Fragment) OS=Peptococcus niger GN=atpD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K +LV+GQMNEPPGAR R+ LTGLTVAE+FRD + QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  206 ESGVI--------DKTSLVFGQMNEPPGARMRIALTGLTVAEYFRDEQNQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 288          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OSTTA (ATP synthase subunit beta, chloroplastic OS=Ostreococcus tauri GN=atpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   36 ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLF+DNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  221 ANSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNNQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 300          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_MYCS5 (ATP synthase subunit beta OS=Mycoplasma synoviae (strain 53) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K ALV+GQMNEPPGAR RV LTGLT+AE+FRD + QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  206 KTALVFGQMNEPPGARMRVALTGLTMAEYFRDKQNQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMG 282          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LACSA (ATP synthase subunit beta, chloroplastic OS=Lactuca sativa GN=atpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQA-DSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K   +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN--EKNIPESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_GNEPA (ATP synthase subunit beta, chloroplastic OS=Gnetum parvifolium GN=atpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K  A+SK ALVYGQMNEPPGAR RVGLT L +AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  214 ESGVIN--EKNIAESKVALVYGQMNEPPGARMRVGLTALAMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 303          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_EQUAR (ATP synthase subunit beta, chloroplastic (Fragment) OS=Equisetum arvense GN=atpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   36 ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  228 SESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_EHRRW (ATP synthase subunit beta OS=Ehrlichia ruminantium (strain Welgevonden) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 66/91 (72.53%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L +K   S+  LVYGQMNEPPGAR RV L+ LT+AE+FRD E QDVL F+DNIFRFTQ+ SE+SALLGRIPSAVGYQPTLA ++G
Sbjct:  227 ESGVINLEEKDK-SQAVLVYGQMNEPPGARLRVALSALTMAEYFRDVENQDVLFFVDNIFRFTQSGSEISALLGRIPSAVGYQPTLAAEMG 316          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_EHRRG (ATP synthase subunit beta OS=Ehrlichia ruminantium (strain Gardel) GN=atpD PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 66/91 (72.53%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L +K   S+  LVYGQMNEPPGAR RV L+ LT+AE+FRD E QDVL F+DNIFRFTQ+ SE+SALLGRIPSAVGYQPTLA ++G
Sbjct:  227 ESGVINLEEKDK-SQAVLVYGQMNEPPGARLRVALSALTMAEYFRDVENQDVLFFVDNIFRFTQSGSEISALLGRIPSAVGYQPTLAAEMG 316          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CYAP4 (ATP synthase subunit beta OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI   D  + SK ALVYGQMNEPPGAR RVGL+ LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  208 ESNVINKDDP-SQSKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 297          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BETVU (ATP synthase subunit beta, chloroplastic OS=Beta vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNI RF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNILRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_PEPNI4.966e-3174.73ATP synthase subunit beta (Fragment) OS=Peptococcu... [more]
ATPB_OSTTA4.966e-3180.00ATP synthase subunit beta, chloroplastic OS=Ostreo... [more]
ATPB_MYCS54.966e-3184.42ATP synthase subunit beta OS=Mycoplasma synoviae (... [more]
ATPB_LACSA4.966e-3176.09ATP synthase subunit beta, chloroplastic OS=Lactuc... [more]
ATPB_GNEPA4.966e-3176.09ATP synthase subunit beta, chloroplastic OS=Gnetum... [more]
ATPB_EQUAR4.966e-3181.25ATP synthase subunit beta, chloroplastic (Fragment... [more]
ATPB_EHRRW4.966e-3172.53ATP synthase subunit beta OS=Ehrlichia ruminantium... [more]
ATPB_EHRRG4.966e-3172.53ATP synthase subunit beta OS=Ehrlichia ruminantium... [more]
ATPB_CYAP44.966e-3175.82ATP synthase subunit beta OS=Cyanothece sp. (strai... [more]
ATPB_BETVU4.966e-3175.82ATP synthase subunit beta, chloroplastic OS=Beta v... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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