FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ANOFW (ATP synthase subunit beta OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++ D    +K A+V+GQMNEPPGAR RV LTGLT+AE+FRD +GQDVL FIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 EMKDSGVINKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB2_LISW6 (ATP synthase subunit beta 2 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++ D     K A+V+GQMNEPPGAR RV LTGLT+AE+FRD E QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 EMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB2_LISMO (ATP synthase subunit beta 2 OS=Listeria monocytogenes GN=atpD2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++ D     K A+V+GQMNEPPGAR RV LTGLT+AE+FRD E QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 EMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB2_LISMF (ATP synthase subunit beta 2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++ D     K A+V+GQMNEPPGAR RV LTGLT+AE+FRD E QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 EMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB2_LISIN (ATP synthase subunit beta 2 OS=Listeria innocua GN=atpD2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.966e-31
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++ D     K A+V+GQMNEPPGAR RV LTGLT+AE+FRD E QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 EMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PYLLI (ATP synthase subunit beta, chloroplastic OS=Pylaiella littoralis GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI       +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL T++G
Sbjct:  207 ESGVIN-ETNLLESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMG 296          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PSINU (ATP synthase subunit beta, chloroplastic OS=Psilotum nudum GN=atpB PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   36 ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  226 SESKVALVYGQMNEPPGARMRVGLTALTIAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 305          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROMT (ATP synthase subunit beta OS=Prochlorococcus marinus (strain NATL2A) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVINSEDL-TKSKLALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PROM1 (ATP synthase subunit beta OS=Prochlorococcus marinus (strain NATL1A) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SK AL +GQMNEPPGAR RVGL+ LT+AEHFRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  210 ESGVINSEDL-TKSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 299          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PRODI (ATP synthase subunit beta OS=Prochloron didemni GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI   D   +SK ALVYGQMNEPPGAR RVGL+ LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  208 ESKVIN-ADNLNESKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 297          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ANOFW4.966e-3174.42ATP synthase subunit beta OS=Anoxybacillus flavith... [more]
ATPB2_LISW64.966e-3175.58ATP synthase subunit beta 2 OS=Listeria welshimeri... [more]
ATPB2_LISMO4.966e-3175.58ATP synthase subunit beta 2 OS=Listeria monocytoge... [more]
ATPB2_LISMF4.966e-3175.58ATP synthase subunit beta 2 OS=Listeria monocytoge... [more]
ATPB2_LISIN4.966e-3175.58ATP synthase subunit beta 2 OS=Listeria innocua GN... [more]
ATPB_PYLLI6.486e-3175.82ATP synthase subunit beta, chloroplastic OS=Pylaie... [more]
ATPB_PSINU6.486e-3180.00ATP synthase subunit beta, chloroplastic OS=Psilot... [more]
ATPB_PROMT6.486e-3175.82ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_PROM16.486e-3175.82ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_PRODI6.486e-3175.82ATP synthase subunit beta OS=Prochloron didemni GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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