FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PEA (ATP synthase subunit beta, chloroplastic OS=Pisum sativum GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 3
Query:   36 ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL T++G
Sbjct:  228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_NEOSM (ATP synthase subunit beta OS=Neorickettsia sennetsu (strain Miyayama) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 3
Query:    3 ESGVIKLGDKQ--ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   DK+    SK  LVYGQMNEPPGARA+V ++ LT+AE+FRD EGQDVL F+DNIFRFTQA +E+S LLGRIPSAVGYQPTLATD+G
Sbjct:  199 ESGVI---DKEHPEKSKVVLVYGQMNEPPGARAKVAMSALTMAEYFRDKEGQDVLFFVDNIFRFTQAGAELSTLLGRIPSAVGYQPTLATDMG 288          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_LEPTE (ATP synthase subunit beta, chloroplastic OS=Leptosira terrestris GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ES VI   +  ++SK ALVYGQMNEPPGAR RV LT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLA+++GG
Sbjct:  208 ESKVIN-AENLSESKVALVYGQMNEPPGARMRVALTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLASEMGG 298          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_GUITH (ATP synthase subunit beta, chloroplastic OS=Guillardia theta GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 3
Query:   39 DSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  212 ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMG 290          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_FUCVE (ATP synthase subunit beta, chloroplastic OS=Fucus vesiculosus GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI       +SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL T++G
Sbjct:  202 ESGVIN-EKNLLESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMG 291          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_EUCMO (ATP synthase subunit beta, chloroplastic OS=Eucomis montana GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K  A+SK ALVYGQMNEPPGAR RVGLT LT+AE+ RD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN--EKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYIRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_EUCBI (ATP synthase subunit beta, chloroplastic OS=Eucomis bicolor GN=atpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K  A+SK ALVYGQMNEPPGAR RVGLT LT+AE+ RD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN--EKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYIRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CHLPB (ATP synthase subunit beta OS=Chlorobium phaeobacteroides (strain BS1) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K ALV+GQMNEPPGARARV LTGL++AE+FRD E +DVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTL T++G
Sbjct:  197 ESGVI--------DKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMG 279          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CHLL2 (ATP synthase subunit beta OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K ALV+GQMNEPPGAR RV LTGL++AE+FRD E +DVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  197 ESGVIE--------KTALVFGQMNEPPGARQRVALTGLSIAEYFRDEENRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 279          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CALS8 (ATP synthase subunit beta OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K  LV+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRF QA SEVSALLGRIPSAVGYQPTLA ++G
Sbjct:  198 ESGVIE--------KTVLVFGQMNEPPGARMRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFIQAGSEVSALLGRIPSAVGYQPTLANEVG 280          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_PEA6.486e-3181.25ATP synthase subunit beta, chloroplastic OS=Pisum ... [more]
ATPB_NEOSM6.486e-3173.12ATP synthase subunit beta OS=Neorickettsia sennets... [more]
ATPB_LEPTE6.486e-3173.91ATP synthase subunit beta, chloroplastic OS=Leptos... [more]
ATPB_GUITH6.486e-3182.28ATP synthase subunit beta, chloroplastic OS=Guilla... [more]
ATPB_FUCVE6.486e-3175.82ATP synthase subunit beta, chloroplastic OS=Fucus ... [more]
ATPB_EUCMO6.486e-3176.09ATP synthase subunit beta, chloroplastic OS=Eucomi... [more]
ATPB_EUCBI6.486e-3176.09ATP synthase subunit beta, chloroplastic OS=Eucomi... [more]
ATPB_CHLPB6.486e-3174.73ATP synthase subunit beta OS=Chlorobium phaeobacte... [more]
ATPB_CHLL26.486e-3174.73ATP synthase subunit beta OS=Chlorobium limicola (... [more]
ATPB_CALS86.486e-3175.82ATP synthase subunit beta OS=Caldicellulosiruptor ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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