FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BREBN (ATP synthase subunit beta OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EG+DVLLF+DNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  209 KTAMVFGQMNEPPGARLRVALTGLTMAEYFRDEEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 285          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BACP3 (ATP synthase subunit beta OS=Bacillus PS3 GN=atpD PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++ D    SK A+V+GQMNEPPGAR RV LTGLT+AE+FRD +GQD LLFIDNIFRFTQA SEVSALLGR+PSA+GYQPTLAT++G
Sbjct:  201 EMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ANATD (ATP synthase subunit beta OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K  LV+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRF QA SEVSALLGRIPSAVGYQPTLA ++G
Sbjct:  198 ESGVIE--------KTVLVFGQMNEPPGARMRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFIQAGSEVSALLGRIPSAVGYQPTLANEVG 280          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ACEWO (ATP synthase subunit beta, sodium ion specific OS=Acetobacterium woodii GN=atpD PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI        +K AL +GQMNEPPGAR R+ L GLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  199 ESGVI--------NKTALCFGQMNEPPGARMRIALAGLTMAEYFRDDEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SCHSP (ATP synthase subunit beta, chloroplastic OS=Schisandra sphenanthera GN=atpB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.471e-31
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNI RF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNISRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PECFR (ATP synthase subunit beta OS=Pectinatus frisingensis GN=atpD PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.471e-31
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI        +K ALVYGQMNEPPGAR RV LTGLT+AE+FRD + QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  201 ESGVI--------NKTALVYGQMNEPPGARMRVALTGLTMAEYFRDVQHQDVLLFIDNIFRFIQAGSEVSALLGRMPSAVGYQPTLTTDVG 283          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PARUW (ATP synthase subunit beta OS=Protochlamydia amoebophila (strain UWE25) GN=atpD PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.471e-31
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESG++        SK +LV+GQMNEPPGAR RVGLTGLT+AEHFRD E Q+VLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLA+++G
Sbjct:  198 ESGIL--------SKTSLVFGQMNEPPGARMRVGLTGLTMAEHFRDQEHQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLASEIG 280          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ILLOL (ATP synthase subunit beta, chloroplastic OS=Illicium oligandrum GN=atpB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.471e-31
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNI RF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNISRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DESVV (ATP synthase subunit beta OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.471e-31
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K AL+YGQMNEPPGARARV LT L  AE+FRD E QDVLLF+DNIFRFTQA SEVSALLGR+PSAVGYQPTL TDLG
Sbjct:  208 KAALIYGQMNEPPGARARVALTALACAEYFRDVENQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTDLG 284          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_DESVH (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.471e-31
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K AL+YGQMNEPPGARARV LT L  AE+FRD E QDVLLF+DNIFRFTQA SEVSALLGR+PSAVGYQPTL TDLG
Sbjct:  208 KAALIYGQMNEPPGARARVALTALACAEYFRDVENQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTDLG 284          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BREBN6.486e-3181.82ATP synthase subunit beta OS=Brevibacillus brevis ... [more]
ATPB_BACP36.486e-3174.42ATP synthase subunit beta OS=Bacillus PS3 GN=atpD ... [more]
ATPB_ANATD6.486e-3175.82ATP synthase subunit beta OS=Anaerocellum thermoph... [more]
ATPB_ACEWO6.486e-3174.73ATP synthase subunit beta, sodium ion specific OS=... [more]
ATPB_SCHSP8.471e-3175.82ATP synthase subunit beta, chloroplastic OS=Schisa... [more]
ATPB_PECFR8.471e-3175.82ATP synthase subunit beta OS=Pectinatus frisingens... [more]
ATPB_PARUW8.471e-3173.63ATP synthase subunit beta OS=Protochlamydia amoebo... [more]
ATPB_ILLOL8.471e-3175.82ATP synthase subunit beta, chloroplastic OS=Illici... [more]
ATPB_DESVV8.471e-3183.12ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_DESVH8.471e-3183.12ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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