FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHORT (ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.069e-33
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKL-GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++G+I L GDK   SK ALVYGQMNEPPGARARV L GLT AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 DAGIIDLEGDK---SKVALVYGQMNEPPGARARVALAGLTQAEYFRDEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHIME (ATP synthase subunit beta OS=Rhizobium meliloti GN=atpD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.069e-33
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARV LTGLTVAE FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  228 ESGVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTVAEQFRD-EGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 316          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PARDP (ATP synthase subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.069e-33
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIK  D  + S+ ALVYGQMNEPPGAR RV LTGLTVAE FRDA G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  197 ESGVIK-PDDLSKSQVALVYGQMNEPPGARMRVALTGLTVAEQFRDATGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SOLUE (ATP synthase subunit beta OS=Solibacter usitatus (strain Ellin6076) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.396e-33
Identity = 73/91 (80.22%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   D    SKCAL+YGQM EPPGAR RVGLTGLTVAE+FRD E QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQP LAT++G
Sbjct:  207 ESGVIDPHD-YTKSKCALIYGQMTEPPGARLRVGLTGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMG 296          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHILW (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.396e-33
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES V K G  +  SK ALVYGQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  204 ESNVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 292          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RHIL3 (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.396e-33
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES V K G  +  SK ALVYGQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  204 ESNVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 292          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CAUSK (ATP synthase subunit beta OS=Caulobacter sp. (strain K31) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.396e-33
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 3
Query:   18 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            K+      S+CALVYGQMNEPPGARARV LTGL++AE+FRD EG+DVLLF+DNIFRFTQA +EVSALLGRIPSAVGYQPTLAT++G
Sbjct:  270 KINGSTEGSRCALVYGQMNEPPGARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMG 355          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICFE (ATP synthase subunit beta OS=Rickettsia felis GN=atpD PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.824e-33
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L +K  +SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVIDL-EKPENSKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.824e-33
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV LTGLTVAE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLEEPEK-SKVALVYGQMNEPPGARARVALTGLTVAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.824e-33
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV LTGLTVAE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLEEPEK-SKVALVYGQMNEPPGARARVALTGLTVAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHORT1.069e-3380.43ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_RHIME1.069e-3383.52ATP synthase subunit beta OS=Rhizobium meliloti GN... [more]
ATPB_PARDP1.069e-3381.32ATP synthase subunit beta OS=Paracoccus denitrific... [more]
ATPB_SOLUE1.396e-3380.22ATP synthase subunit beta OS=Solibacter usitatus (... [more]
ATPB_RHILW1.396e-3382.42ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_RHIL31.396e-3382.42ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_CAUSK1.396e-3377.91ATP synthase subunit beta OS=Caulobacter sp. (stra... [more]
ATPB_RICFE1.824e-3380.43ATP synthase subunit beta OS=Rickettsia felis GN=a... [more]
ATPB_RICBR1.824e-3381.52ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_RICB81.824e-3381.52ATP synthase subunit beta OS=Rickettsia bellii (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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