FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_OCHA4 (ATP synthase subunit beta OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.382e-33
Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SE+SALLGRIPSAVGYQPTLATD+G
Sbjct:  241 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-KGQDVLFFVDNIFRFTQAGSELSALLGRIPSAVGYQPTLATDMG 329          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_HYPNA (ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.382e-33
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI L   + +S+ +LVYGQMNEPPGARARV LTGLT AE+FRD EG+DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESNVINL---EGESRMSLVYGQMNEPPGARARVALTGLTQAEYFRDVEGKDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 287          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB1_GLUOX (ATP synthase subunit beta 1 OS=Gluconobacter oxydans GN=atpD1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.382e-33
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 3
Query:    3 ESGVIKLGDKQAD--SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++GVIK+ +  +   SK ALVYGQMNEPPGAR+RV LTGL++AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  208 DAGVIKIAEDGSTEGSKVALVYGQMNEPPGARSRVALTGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMG 300          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SILPO (ATP synthase subunit beta OS=Silicibacter pomeroyi GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.111e-33
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VIKL + + +S+ ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  197 ESNVIKLENLE-ESQVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PARL1 (ATP synthase subunit beta OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.111e-33
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 3
Query:    3 ESGVIKLGDKQ----ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K  ++       SKCALV+GQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTL+TD+G
Sbjct:  197 ESGVNKDPNENNGDTTGSKCALVFGQMNEPPGARARVALTGLTVAEHFRD-KGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLSTDMG 290          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_CAUCR (ATP synthase subunit beta OS=Caulobacter crescentus GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.111e-33
Identity = 66/78 (84.62%), Postives = 75/78 (96.15%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            S+CALVYGQMNEPPGARARV LTGL++AE+FRD EG+DVLLF+DNIFRFTQA +EVSALLGRIPSAVGYQPTLAT++G
Sbjct:  275 SRCALVYGQMNEPPGARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMG 352          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB2_DINSH (ATP synthase subunit beta 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.111e-33
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VIK  D  ++S+ ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  197 ESNVIK-PDNLSESQVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICRS (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLAEPEK-SKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICRO (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Iowa) GN=atpD PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLAEPEK-SKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICPU (ATP synthase subunit beta OS=Rickettsia peacockii (strain Rustic) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLAEPEK-SKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_OCHA42.382e-3381.32ATP synthase subunit beta OS=Ochrobactrum anthropi... [more]
ATPB_HYPNA2.382e-3378.02ATP synthase subunit beta OS=Hyphomonas neptunium ... [more]
ATPB1_GLUOX2.382e-3375.27ATP synthase subunit beta 1 OS=Gluconobacter oxyda... [more]
ATPB_SILPO3.111e-3379.12ATP synthase subunit beta OS=Silicibacter pomeroyi... [more]
ATPB_PARL13.111e-3377.89ATP synthase subunit beta OS=Parvibaculum lavament... [more]
ATPB_CAUCR3.111e-3384.62ATP synthase subunit beta OS=Caulobacter crescentu... [more]
ATPB2_DINSH3.111e-3379.12ATP synthase subunit beta 2 OS=Dinoroseobacter shi... [more]
ATPB_RICRS4.062e-3379.35ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICRO4.062e-3379.35ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICPU4.062e-3379.35ATP synthase subunit beta OS=Rickettsia peacockii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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