FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICM5 (ATP synthase subunit beta OS=Rickettsia massiliae (strain Mtu5) GN=atpD PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLAEPEK-SKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLAEPEK-SKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_RICAE (ATP synthase subunit beta OS=Rickettsia africae (strain ESF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVI L + +  SK ALVYGQMNEPPGARARV L+GLT+AE FRD  EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  199 DSGVINLAEPEK-SKVALVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_JANSC (ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.062e-33
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI + D   +SK ALVYGQMNEPPGAR R+ L+GLT+AE FRDA G DVL FIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  197 ESGVI-VPDNLPESKIALVYGQMNEPPGARMRIALSGLTLAEQFRDATGADVLFFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ZYMMO (ATP synthase subunit beta OS=Zymomonas mobilis GN=atpD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.306e-33
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 3
Query:    3 ESGVIKLGDKQAD-----SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVI   DK  +     SK ALVYGQMNEPPGARARV L+GLT+AE+FRD EGQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G
Sbjct:  202 EAGVIA-SDKDGNAISEGSKVALVYGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG 296          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SILST (ATP synthase subunit beta OS=Silicibacter sp. (strain TM1040) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.306e-33
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VIK  D   +S+ ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  197 ESNVIK-PDNLEESQVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_PEDPA (ATP synthase subunit beta OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.306e-33
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   45 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            + A+VYGQMNEPPGAR RV LTGLT+AEHFRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLAT++G
Sbjct:  205 RTAMVYGQMNEPPGARMRVALTGLTIAEHFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMG 281          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.306e-33
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI     + +SK AL+YGQMNEPPGARARV LTGLTVAE+FRD  GQDVL F+DNIFRFTQA +EVSALLGRIPSAVGYQPTL TD+G
Sbjct:  198 ESGVIDPNSWE-NSKAALIYGQMNEPPGARARVALTGLTVAEYFRDLGGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLGTDMG 287          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_BARBK (ATP synthase subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.306e-33
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            SKCALVYGQMNEPPGARARV L+GLT+AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  272 SKCALVYGQMNEPPGARARVALSGLTIAENFRD-EGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 348          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_ALKMQ (ATP synthase subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.306e-33
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI         K +LVYGQMNEPPGAR RVGLTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  199 ESGVI--------DKTSLVYGQMNEPPGARMRVGLTGLTMAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 281          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RICM54.062e-3379.35ATP synthase subunit beta OS=Rickettsia massiliae ... [more]
ATPB_RICCN4.062e-3379.35ATP synthase subunit beta OS=Rickettsia conorii GN... [more]
ATPB_RICAE4.062e-3379.35ATP synthase subunit beta OS=Rickettsia africae (s... [more]
ATPB_JANSC4.062e-3379.12ATP synthase subunit beta OS=Jannaschia sp. (strai... [more]
ATPB_ZYMMO5.306e-3376.04ATP synthase subunit beta OS=Zymomonas mobilis GN=... [more]
ATPB_SILST5.306e-3379.12ATP synthase subunit beta OS=Silicibacter sp. (str... [more]
ATPB_PEDPA5.306e-3387.01ATP synthase subunit beta OS=Pediococcus pentosace... [more]
ATPB_MAGSM5.306e-3378.02ATP synthase subunit beta OS=Magnetococcus sp. (st... [more]
ATPB_BARBK5.306e-3388.46ATP synthase subunit beta OS=Bartonella bacillifor... [more]
ATPB_ALKMQ5.306e-3379.12ATP synthase subunit beta OS=Alkaliphilus metallir... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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