FC876906

Overview
NameFC876906
Unique NameFC876906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.326e-20
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N+P++L LDCD Y N+  + R+AMCF +DP++   + +VQFPQ+F  I+ +D Y  R    + +N
Sbjct:  537 IRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQVGRKVCYVQFPQRFDGIDVHDRYANRNTVFFDIN 609          

HSP 2 Score: 46.2098 bits (108), Expect = 1.326e-20
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  129 TSNSIGFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            T +  G  Q+    SG  +T       E+P L+YVSREKRP   HH KAGA+N L+ +S
Sbjct:  486 TRDHPGMIQVFLGHSGGHDTEGN----ELPRLVYVSREKRPGFQHHKKAGAMNALIRVS 540          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.725e-20
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RV+GV++N+P++L LDCD Y N+  + R+AMCF +DP+I   + +VQFPQ+F  I+  D Y  R    + +N
Sbjct:  508 VRVAGVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQIGKKVCYVQFPQRFDGIDTNDRYANRNTVFFDIN 580          

HSP 2 Score: 45.0542 bits (105), Expect = 1.725e-20
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3
Query:  210 EMPLLIYVSREKRPDHLHHFKAGALNVLV 296
            E+P L+YVSREKRP   HH KAGA+N LV
Sbjct:  480 ELPRLVYVSREKRPGFQHHKKAGAMNALV 508          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.794e-20
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+P++L LDCD Y N+  + R++MCF +DP++   L +VQFPQ+F  I+  D Y  R
Sbjct:  485 VRVSAVLTNAPFMLNLDCDHYINNSKAIRESMCFLMDPQLGKKLCYVQFPQRFDGIDLNDRYANR 549          

HSP 2 Score: 46.9802 bits (110), Expect = 3.794e-20
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 3
Query:  210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            E+P L+YVSREKRP + HH KAGA+N +V +S
Sbjct:  457 ELPRLVYVSREKRPGYAHHKKAGAMNAMVRVS 488          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.819e-20
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFR 576
            LRVS  I+    IL LDCDMY N+  S R A+C  LD K    +AFVQFPQ F N+ + D+Y    R
Sbjct:  293 LRVSSKITCGKIILNLDCDMYANNSKSTRDALCILLDEKEGKEIAFVQFPQCFDNVTRNDLYGSMMR 359          

HSP 2 Score: 51.2174 bits (121), Expect = 3.819e-20
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 3
Query:  192 RQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*ISIRTT 317
            R+ + + +P L+Y+SREKRP H H+FKAGA+N L+ +S + T
Sbjct:  259 REGNTIAIPTLVYLSREKRPQHHHNFKAGAMNALLRVSSKIT 300          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.964e-20
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHN 540
            LRVSG+++N+PY L +DCDMY N+P   RQAMC  L + K S+  AFVQFPQKF++
Sbjct:  278 LRVSGLMTNAPYTLNVDCDMYANEPDVVRQAMCVFLQNSKNSNHCAFVQFPQKFYD 333          

HSP 2 Score: 48.9062 bits (115), Expect = 4.964e-20
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 3
Query:  201 DLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            D  E+P L+Y+SREKRP++LHH+K GA+N L+ +S
Sbjct:  247 DEKEVPHLVYISREKRPNYLHHYKTGAMNFLLRVS 281          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.457e-20
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561
            +RVS VISNSP I+ +DCDMY N+  S R A+CF LD +    + FVQ+PQ F N+   DIY
Sbjct:  304 IRVSSVISNSPIIMNVDCDMYSNNSESIRDALCFFLDEEQGQDIGFVQYPQNFENVVHNDIY 365          

HSP 2 Score: 44.669 bits (104), Expect = 6.457e-20
Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 3
Query:  123 YLTSNSIGFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            + +S+     QI+ D++ +       D   +P L+Y++REK+P   HHFKAG+LN L+ +S
Sbjct:  249 FTSSDHPSIVQILIDSNKQKAV--DIDGNALPTLVYMAREKKPQKQHHFKAGSLNALIRVS 307          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.402e-20
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561
            +RVS +IS+SP IL +DCDMY N+  S R A+CF LD ++S  + FVQ+PQ ++N+ K +IY
Sbjct:  290 IRVSALISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEMSHKIGFVQYPQNYNNMTKNNIY 351          

HSP 2 Score: 43.8986 bits (102), Expect = 8.402e-20
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 3
Query:  174 GESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            G+S+     D   +P L+Y++REK P + H+FKAGALN L+ +S
Sbjct:  250 GKSQNAVDDDGNVLPTLVYMAREKSPQYHHNFKAGALNALIRVS 293          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.002e-16
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  373 QLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFR 576
            QLR S ++SN+ +I+  DCD Y N+  + R A+CF LD +   + AFVQFPQ+F N++  D Y    R
Sbjct:  395 QLRASALLSNAQFIINFDCDHYINNSQALRAAICFMLDQREGDNTAFVQFPQRFDNVDPKDRYGNHNR 462          

HSP 2 Score: 40.817 bits (94), Expect = 1.002e-16
Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 3
Query:  144 GFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALN 287
            G    ++D++G +      D V +P+L+YVSR K P++ H+ KAGALN
Sbjct:  347 GHNLSLKDSTGNNLNFNATD-VRIPMLVYVSRGKNPNYDHNKKAGALN 393          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.302e-16
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  373 QLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFR 576
            QLR S ++SN+ +I+  DCD Y N+  + R A+CF LD +   + AFVQFPQ+F N++  D Y    R
Sbjct:  395 QLRASALLSNAQFIINFDCDHYINNSQAFRAAICFMLDQREGDNTAFVQFPQRFDNVDPKDRYGNHNR 462          

HSP 2 Score: 40.817 bits (94), Expect = 1.302e-16
Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 3
Query:  144 GFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALN 287
            G    ++D++G +      D V +P+L+YVSR K P++ H+ KAGALN
Sbjct:  347 GHNLSLKDSTGNNLNFNATD-VRIPMLVYVSRGKNPNYDHNKKAGALN 393          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.827e-16
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPK-ISSSLAFVQFPQKFHNINKYDIYXGRFR 576
            LRVS ++SN+P+I+  DCD Y N+  + R  MCF LD +     +AFVQFPQ+F +++  D Y    R
Sbjct:  405 LRVSALLSNAPFIINFDCDHYVNNSQAFRAPMCFMLDRRGGGDDVAFVQFPQRFDDVDPTDRYANHNR 472          

HSP 2 Score: 43.5134 bits (101), Expect = 4.827e-16
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  207 VEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            V +P+L+Y+SREKRP + H  KAGA+N L+ +S
Sbjct:  376 VRLPMLVYISREKRPGYNHQKKAGAMNALLRVS 408          
The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CESA9_ORYSI1.326e-2042.47Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA7_ARATH1.725e-2043.84Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA4_ARATH3.794e-2046.15Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CSLE1_ARATH3.819e-2049.25Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLB5_ARATH4.964e-2058.93Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLE2_ORYSJ6.457e-2053.23Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE6_ORYSJ8.402e-2051.61Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLF3_ORYSI1.002e-1644.12Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ1.302e-1644.12Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF4_ORYSJ4.827e-1644.12Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF01RM1 EHR Citrus clementina cDNA clone KN0AAN3BF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bp
GCACGAGGGGAACATGTGACGAAGGCTGTAGAAGATGGAGATTATGGGAA
CAGCCAAAACCACTCTACTATTATTGAGGTAACTTTGTGTCATACTCTGC
CACTTACAAGTTTAAGTTACTTTATTTAACATCTAATTCAATTGGATTCC
AGCAGATAATACAAGATACTTCTGGTGAGAGTGAGACAATTAGGCAAGCA
GATCTTGTTGAAATGCCTTTGCTTATTTATGTTTCTCGTGAGAAAAGGCC
TGATCATCTTCATCATTTCAAGGCTGGAGCCCTCAATGTTCTTGTATGAA
TCAGTATACGCACAACCTACAGATTATACTTGTTTGTATTTAAAATGCTC
TGATTAACATTGTTCAAGCTTGCAGCTTCGTGTCTCTGGCGTGATAAGCA
ATTCTCCCTACATATTGGGGCTGGACTGTGATATGTACTGCAATGATCCA
ACTTCAGCTAGGCAAGCAATGTGTTTCCACCTTGACCCAAAAATCTCTTC
GTCCTTAGCATTCGTTCAGTTCCCTCAGAAATTCCATAATATCAATAAGT
ATGATATCTACNATGGACGGTTTAGATCTGCATATTGCGTAAATAAATTA
AAGCCTATCTACTATCCCCTTATGCAGATAAATGAGCCAATATTAAACCA
CTAGATGTAGCAATTATGTACAT
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