FC876906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.326e-20 Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N+P++L LDCD Y N+ + R+AMCF +DP++ + +VQFPQ+F I+ +D Y R + +N Sbjct: 537 IRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQVGRKVCYVQFPQRFDGIDVHDRYANRNTVFFDIN 609 HSP 2 Score: 46.2098 bits (108), Expect = 1.326e-20 Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 3 Query: 129 TSNSIGFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 T + G Q+ SG +T E+P L+YVSREKRP HH KAGA+N L+ +S Sbjct: 486 TRDHPGMIQVFLGHSGGHDTEGN----ELPRLVYVSREKRPGFQHHKKAGAMNALIRVS 540
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.725e-20 Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RV+GV++N+P++L LDCD Y N+ + R+AMCF +DP+I + +VQFPQ+F I+ D Y R + +N Sbjct: 508 VRVAGVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQIGKKVCYVQFPQRFDGIDTNDRYANRNTVFFDIN 580 HSP 2 Score: 45.0542 bits (105), Expect = 1.725e-20 Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3 Query: 210 EMPLLIYVSREKRPDHLHHFKAGALNVLV 296 E+P L+YVSREKRP HH KAGA+N LV Sbjct: 480 ELPRLVYVSREKRPGFQHHKKAGAMNALV 508
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.794e-20 Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+P++L LDCD Y N+ + R++MCF +DP++ L +VQFPQ+F I+ D Y R Sbjct: 485 VRVSAVLTNAPFMLNLDCDHYINNSKAIRESMCFLMDPQLGKKLCYVQFPQRFDGIDLNDRYANR 549 HSP 2 Score: 46.9802 bits (110), Expect = 3.794e-20 Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 3 Query: 210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 E+P L+YVSREKRP + HH KAGA+N +V +S Sbjct: 457 ELPRLVYVSREKRPGYAHHKKAGAMNAMVRVS 488
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.819e-20 Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFR 576 LRVS I+ IL LDCDMY N+ S R A+C LD K +AFVQFPQ F N+ + D+Y R Sbjct: 293 LRVSSKITCGKIILNLDCDMYANNSKSTRDALCILLDEKEGKEIAFVQFPQCFDNVTRNDLYGSMMR 359 HSP 2 Score: 51.2174 bits (121), Expect = 3.819e-20 Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 3 Query: 192 RQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*ISIRTT 317 R+ + + +P L+Y+SREKRP H H+FKAGA+N L+ +S + T Sbjct: 259 REGNTIAIPTLVYLSREKRPQHHHNFKAGAMNALLRVSSKIT 300
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 4.964e-20 Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHN 540 LRVSG+++N+PY L +DCDMY N+P RQAMC L + K S+ AFVQFPQKF++ Sbjct: 278 LRVSGLMTNAPYTLNVDCDMYANEPDVVRQAMCVFLQNSKNSNHCAFVQFPQKFYD 333 HSP 2 Score: 48.9062 bits (115), Expect = 4.964e-20 Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 3 Query: 201 DLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 D E+P L+Y+SREKRP++LHH+K GA+N L+ +S Sbjct: 247 DEKEVPHLVYISREKRPNYLHHYKTGAMNFLLRVS 281
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.457e-20 Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561 +RVS VISNSP I+ +DCDMY N+ S R A+CF LD + + FVQ+PQ F N+ DIY Sbjct: 304 IRVSSVISNSPIIMNVDCDMYSNNSESIRDALCFFLDEEQGQDIGFVQYPQNFENVVHNDIY 365 HSP 2 Score: 44.669 bits (104), Expect = 6.457e-20 Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 3 Query: 123 YLTSNSIGFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 + +S+ QI+ D++ + D +P L+Y++REK+P HHFKAG+LN L+ +S Sbjct: 249 FTSSDHPSIVQILIDSNKQKAV--DIDGNALPTLVYMAREKKPQKQHHFKAGSLNALIRVS 307
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.402e-20 Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561 +RVS +IS+SP IL +DCDMY N+ S R A+CF LD ++S + FVQ+PQ ++N+ K +IY Sbjct: 290 IRVSALISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEMSHKIGFVQYPQNYNNMTKNNIY 351 HSP 2 Score: 43.8986 bits (102), Expect = 8.402e-20 Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 3 Query: 174 GESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 G+S+ D +P L+Y++REK P + H+FKAGALN L+ +S Sbjct: 250 GKSQNAVDDDGNVLPTLVYMAREKSPQYHHNFKAGALNALIRVS 293
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.002e-16 Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 373 QLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFR 576 QLR S ++SN+ +I+ DCD Y N+ + R A+CF LD + + AFVQFPQ+F N++ D Y R Sbjct: 395 QLRASALLSNAQFIINFDCDHYINNSQALRAAICFMLDQREGDNTAFVQFPQRFDNVDPKDRYGNHNR 462 HSP 2 Score: 40.817 bits (94), Expect = 1.002e-16 Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 3 Query: 144 GFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALN 287 G ++D++G + D V +P+L+YVSR K P++ H+ KAGALN Sbjct: 347 GHNLSLKDSTGNNLNFNATD-VRIPMLVYVSRGKNPNYDHNKKAGALN 393
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.302e-16 Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 373 QLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFR 576 QLR S ++SN+ +I+ DCD Y N+ + R A+CF LD + + AFVQFPQ+F N++ D Y R Sbjct: 395 QLRASALLSNAQFIINFDCDHYINNSQAFRAAICFMLDQREGDNTAFVQFPQRFDNVDPKDRYGNHNR 462 HSP 2 Score: 40.817 bits (94), Expect = 1.302e-16 Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 3 Query: 144 GFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALN 287 G ++D++G + D V +P+L+YVSR K P++ H+ KAGALN Sbjct: 347 GHNLSLKDSTGNNLNFNATD-VRIPMLVYVSRGKNPNYDHNKKAGALN 393
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.827e-16 Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPK-ISSSLAFVQFPQKFHNINKYDIYXGRFR 576 LRVS ++SN+P+I+ DCD Y N+ + R MCF LD + +AFVQFPQ+F +++ D Y R Sbjct: 405 LRVSALLSNAPFIINFDCDHYVNNSQAFRAPMCFMLDRRGGGDDVAFVQFPQRFDDVDPTDRYANHNR 472 HSP 2 Score: 43.5134 bits (101), Expect = 4.827e-16 Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3 Query: 207 VEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 V +P+L+Y+SREKRP + H KAGA+N L+ +S Sbjct: 376 VRLPMLVYISREKRPGYNHQKKAGAMNALLRVS 408 The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bpback to top |