FC876906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.113e-14 Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +R S ++SN P+IL LDCD Y + + R+ MCF +D + L +VQFPQ+F I+ D Y + VN Sbjct: 597 VRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMD-RGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVN 668 HSP 2 Score: 42.3578 bits (98), Expect = 1.113e-14 Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 3 Query: 213 MPLLIYVSREKRPDHLHHFKAGALNVLV 296 +P+L+YVSREKRP + H+ KAGA+N LV Sbjct: 570 LPMLVYVSREKRPGYDHNKKAGAMNALV 597
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2) HSP 1 Score: 58.5362 bits (140), Expect = 1.113e-14 Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +R S ++SN P+IL LDCD Y + + R+ MCF +D + L +VQFPQ+F I+ D Y + VN Sbjct: 597 VRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMD-RGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVN 668 HSP 2 Score: 42.3578 bits (98), Expect = 1.113e-14 Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 3 Query: 213 MPLLIYVSREKRPDHLHHFKAGALNVLV 296 +P+L+YVSREKRP + H+ KAGA+N LV Sbjct: 570 LPMLVYVSREKRPGYDHNKKAGAMNALV 597
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.120e-14 Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD-----PKISSSLAFVQFPQKFHNINKYDIYXGRFR 576 LR S V+SN+P+IL LDCD Y N+ + R +CF ++ + + +AFVQFPQ+F ++ D Y R Sbjct: 351 LRASAVLSNAPFILNLDCDHYVNNSQALRAGICFMIERRGGGAEDAGDVAFVQFPQRFDGVDPGDRYANHNR 422 HSP 2 Score: 41.5874 bits (96), Expect = 1.120e-14 Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 3 Query: 144 GFQQIIQDTSGESETIRQADL----------VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296 G Q++ D++G + + AD V +P L+YV REKR HH KAGA+N L+ Sbjct: 291 GVVQVLIDSAGSAPQLGVADGSKLIDLASVDVRLPALVYVCREKRRGRAHHRKAGAMNALL 351
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3) HSP 1 Score: 55.8398 bits (133), Expect = 1.122e-14 Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 379 RVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL--DPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAY 585 RVS V++N+P +L +DCDM+ NDP AMC L D +ISS FVQ PQ F+ K D + + Y Sbjct: 327 RVSAVMTNAPIMLNVDCDMFANDPQVVLHAMCLLLGFDDEISS--GFVQVPQSFYGDLKDDPFGNKLEVIY 395 HSP 2 Score: 45.0542 bits (105), Expect = 1.122e-14 Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 216 PLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 P LIYVSREK P H HH+KAGA+N L +S Sbjct: 300 PHLIYVSREKSPGHHHHYKAGAMNALTRVS 329
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 3.199e-14 Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 Query: 379 RVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYD 555 RVS +++N+P++L LDCDM+ N+P AMC L S AFVQ PQKF+ K D Sbjct: 280 RVSALMTNAPFMLNLDCDMFVNNPRVVLHAMCLLLGFDDEISCAFVQTPQKFYGALKDD 338 HSP 2 Score: 42.3578 bits (98), Expect = 3.199e-14 Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 3 Query: 216 PLLIYVSREKRPDHLHHFKAGALNVLV*ISIRTT 317 P LIYVSREK P+ HH+KAGA+N L +S T Sbjct: 253 PRLIYVSREKSPNLHHHYKAGAMNALTRVSALMT 286
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 4.130e-14 Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +R S ++SN P+IL LDCD Y + + R +CF +D +++VQFPQ+F I+ D Y + + +N Sbjct: 455 VRASAIMSNGPFILNLDCDHYVYNSRAFRDGICFMMDHD-GDRVSYVQFPQRFEGIDPSDRYANKNTVFFDIN 526 HSP 2 Score: 43.5134 bits (101), Expect = 4.130e-14 Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 3 Query: 207 VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296 + +P+L+YVSREKRP + H+ KAGA+N LV Sbjct: 426 IRLPMLVYVSREKRPGYDHNKKAGAMNALV 455
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14 Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V+SN+PY+L LDCD Y N+ + R+AMCF +DP + + +VQFPQ+F I+++D Y R Sbjct: 549 VRVSAVLSNAPYLLNLDCDHYINNSKAIREAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 613
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 5.349e-14 Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561 +R S ++SN P+IL LDCD Y + + R+ MCF +D + + ++QFPQ+F I+ D Y Sbjct: 596 VRASAILSNGPFILNLDCDHYIYNCKAVREGMCFMMD-RGGEDICYIQFPQRFEGIDPSDRY 656 HSP 2 Score: 40.817 bits (94), Expect = 5.349e-14 Identity = 17/28 (60.71%), Postives = 23/28 (82.14%), Query Frame = 3 Query: 213 MPLLIYVSREKRPDHLHHFKAGALNVLV 296 +P+ +YVSREKRP + H+ KAGA+N LV Sbjct: 569 LPMFVYVSREKRPGYDHNKKAGAMNALV 596
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14 Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V+SN+PY+L +DCD Y N+ + R+AMCF +DP+ + +VQFPQ+F I+++D Y R Sbjct: 552 IRVSAVLSNAPYLLNVDCDHYINNSKAIREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNR 616
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+PYIL LDCD Y N+ + R+AMCF +DP + + +VQFPQ+F I++ D Y R Sbjct: 458 VRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRDVCYVQFPQRFDGIDRSDRYANR 522 The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bpback to top |