FC876906

Overview
NameFC876906
Unique NameFC876906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.113e-14
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +R S ++SN P+IL LDCD Y  +  + R+ MCF +D +    L +VQFPQ+F  I+  D Y       + VN
Sbjct:  597 VRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMD-RGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVN 668          

HSP 2 Score: 42.3578 bits (98), Expect = 1.113e-14
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 3
Query:  213 MPLLIYVSREKRPDHLHHFKAGALNVLV 296
            +P+L+YVSREKRP + H+ KAGA+N LV
Sbjct:  570 LPMLVYVSREKRPGYDHNKKAGAMNALV 597          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.113e-14
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +R S ++SN P+IL LDCD Y  +  + R+ MCF +D +    L +VQFPQ+F  I+  D Y       + VN
Sbjct:  597 VRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMD-RGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVN 668          

HSP 2 Score: 42.3578 bits (98), Expect = 1.113e-14
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 3
Query:  213 MPLLIYVSREKRPDHLHHFKAGALNVLV 296
            +P+L+YVSREKRP + H+ KAGA+N LV
Sbjct:  570 LPMLVYVSREKRPGYDHNKKAGAMNALV 597          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.120e-14
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD-----PKISSSLAFVQFPQKFHNINKYDIYXGRFR 576
            LR S V+SN+P+IL LDCD Y N+  + R  +CF ++      + +  +AFVQFPQ+F  ++  D Y    R
Sbjct:  351 LRASAVLSNAPFILNLDCDHYVNNSQALRAGICFMIERRGGGAEDAGDVAFVQFPQRFDGVDPGDRYANHNR 422          

HSP 2 Score: 41.5874 bits (96), Expect = 1.120e-14
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 3
Query:  144 GFQQIIQDTSGESETIRQADL----------VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296
            G  Q++ D++G +  +  AD           V +P L+YV REKR    HH KAGA+N L+
Sbjct:  291 GVVQVLIDSAGSAPQLGVADGSKLIDLASVDVRLPALVYVCREKRRGRAHHRKAGAMNALL 351          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 55.8398 bits (133), Expect = 1.122e-14
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  379 RVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL--DPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAY 585
            RVS V++N+P +L +DCDM+ NDP     AMC  L  D +ISS   FVQ PQ F+   K D +  +    Y
Sbjct:  327 RVSAVMTNAPIMLNVDCDMFANDPQVVLHAMCLLLGFDDEISS--GFVQVPQSFYGDLKDDPFGNKLEVIY 395          

HSP 2 Score: 45.0542 bits (105), Expect = 1.122e-14
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  216 PLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            P LIYVSREK P H HH+KAGA+N L  +S
Sbjct:  300 PHLIYVSREKSPGHHHHYKAGAMNALTRVS 329          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 3.199e-14
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:  379 RVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYD 555
            RVS +++N+P++L LDCDM+ N+P     AMC  L      S AFVQ PQKF+   K D
Sbjct:  280 RVSALMTNAPFMLNLDCDMFVNNPRVVLHAMCLLLGFDDEISCAFVQTPQKFYGALKDD 338          

HSP 2 Score: 42.3578 bits (98), Expect = 3.199e-14
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  216 PLLIYVSREKRPDHLHHFKAGALNVLV*ISIRTT 317
            P LIYVSREK P+  HH+KAGA+N L  +S   T
Sbjct:  253 PRLIYVSREKSPNLHHHYKAGAMNALTRVSALMT 286          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.130e-14
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +R S ++SN P+IL LDCD Y  +  + R  +CF +D      +++VQFPQ+F  I+  D Y  +    + +N
Sbjct:  455 VRASAIMSNGPFILNLDCDHYVYNSRAFRDGICFMMDHD-GDRVSYVQFPQRFEGIDPSDRYANKNTVFFDIN 526          

HSP 2 Score: 43.5134 bits (101), Expect = 4.130e-14
Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  207 VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296
            + +P+L+YVSREKRP + H+ KAGA+N LV
Sbjct:  426 IRLPMLVYVSREKRPGYDHNKKAGAMNALV 455          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V+SN+PY+L LDCD Y N+  + R+AMCF +DP +   + +VQFPQ+F  I+++D Y  R
Sbjct:  549 VRVSAVLSNAPYLLNLDCDHYINNSKAIREAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 613          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.349e-14
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561
            +R S ++SN P+IL LDCD Y  +  + R+ MCF +D +    + ++QFPQ+F  I+  D Y
Sbjct:  596 VRASAILSNGPFILNLDCDHYIYNCKAVREGMCFMMD-RGGEDICYIQFPQRFEGIDPSDRY 656          

HSP 2 Score: 40.817 bits (94), Expect = 5.349e-14
Identity = 17/28 (60.71%), Postives = 23/28 (82.14%), Query Frame = 3
Query:  213 MPLLIYVSREKRPDHLHHFKAGALNVLV 296
            +P+ +YVSREKRP + H+ KAGA+N LV
Sbjct:  569 LPMFVYVSREKRPGYDHNKKAGAMNALV 596          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V+SN+PY+L +DCD Y N+  + R+AMCF +DP+    + +VQFPQ+F  I+++D Y  R
Sbjct:  552 IRVSAVLSNAPYLLNVDCDHYINNSKAIREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNR 616          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+PYIL LDCD Y N+  + R+AMCF +DP +   + +VQFPQ+F  I++ D Y  R
Sbjct:  458 VRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRDVCYVQFPQRFDGIDRSDRYANR 522          
The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CSLD1_ORYSJ1.113e-1439.73Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI1.113e-1439.73Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLF7_ORYSJ1.120e-1440.28Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLH3_ORYSJ1.122e-1443.66Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLH1_ORYSJ3.199e-1447.46Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLD6_ARATH4.130e-1435.62Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESA6_ORYSJ4.426e-1449.23Probable cellulose synthase A catalytic subunit 6 ... [more]
CSLD4_ARATH5.349e-1440.32Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CESA9_ARATH9.860e-1447.69Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA4_ORYSJ9.860e-1449.23Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF01RM1 EHR Citrus clementina cDNA clone KN0AAN3BF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bp
GCACGAGGGGAACATGTGACGAAGGCTGTAGAAGATGGAGATTATGGGAA
CAGCCAAAACCACTCTACTATTATTGAGGTAACTTTGTGTCATACTCTGC
CACTTACAAGTTTAAGTTACTTTATTTAACATCTAATTCAATTGGATTCC
AGCAGATAATACAAGATACTTCTGGTGAGAGTGAGACAATTAGGCAAGCA
GATCTTGTTGAAATGCCTTTGCTTATTTATGTTTCTCGTGAGAAAAGGCC
TGATCATCTTCATCATTTCAAGGCTGGAGCCCTCAATGTTCTTGTATGAA
TCAGTATACGCACAACCTACAGATTATACTTGTTTGTATTTAAAATGCTC
TGATTAACATTGTTCAAGCTTGCAGCTTCGTGTCTCTGGCGTGATAAGCA
ATTCTCCCTACATATTGGGGCTGGACTGTGATATGTACTGCAATGATCCA
ACTTCAGCTAGGCAAGCAATGTGTTTCCACCTTGACCCAAAAATCTCTTC
GTCCTTAGCATTCGTTCAGTTCCCTCAGAAATTCCATAATATCAATAAGT
ATGATATCTACNATGGACGGTTTAGATCTGCATATTGCGTAAATAAATTA
AAGCCTATCTACTATCCCCTTATGCAGATAAATGAGCCAATATTAAACCA
CTAGATGTAGCAATTATGTACAT
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