FC876906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+PYIL LDCD Y N+ + R+AMCF +DP + + +VQFPQ+F I++ D Y R Sbjct: 458 VRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRDVCYVQFPQRFDGIDRSDRYANR 522
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+PY+L LDCD Y N+ + ++AMCF +DP + + +VQFPQ+F I+++D Y R Sbjct: 548 VRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 612
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+PY+L LDCD Y N+ + ++AMCF +DP + + +VQFPQ+F I+++D Y R Sbjct: 548 VRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 612
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+PY+L LDCD Y N+ + ++AMCF +DP + + +VQFPQ+F I+++D Y R Sbjct: 549 VRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 613
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V+SN+PY+L +DCD Y N+ + R++MCF +DP+ + +VQFPQ+F I+++D Y R Sbjct: 547 IRVSAVLSNAPYLLNVDCDHYINNSKAIRESMCFMMDPQSGKKVCYVQFPQRFDGIDRHDRYSNR 611
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12 Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N Y+L LDCD Y N+ + R+AMCF +DP + S+ +VQFPQ+F I++ D Y R + +N Sbjct: 546 VRVSAVLTNGQYMLNLDCDHYINNSKALREAMCFLMDPNLGRSVCYVQFPQRFDGIDRNDRYANRNTVFFDIN 618
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N Y+L LDCD Y N+ + R+AMCF +DP + + +VQFPQ+F I++ D Y R + +N Sbjct: 539 VRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDIN 611
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N Y+L LDCD Y N+ + R+AMCF +DP + + +VQFPQ+F I++ D Y R + +N Sbjct: 539 VRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDIN 611
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 9.961e-12 Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561 +R S ++SN P++L DCD Y + + R+AMC+ LD + + ++QFPQ+F I+ D Y Sbjct: 478 VRASAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLD-RGGDRICYIQFPQRFEGIDPSDRY 538 HSP 2 Score: 35.4242 bits (80), Expect = 9.961e-12 Identity = 16/48 (33.33%), Postives = 30/48 (62.50%), Query Frame = 3 Query: 156 IIQDTSGESETIRQADL-VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296 ++ +G+ + D+ + +P+ Y+SREKR + H+ KAGA+N +V Sbjct: 431 VVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAMV 478
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 9.961e-12 Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561 +R S ++SN P++L DCD Y + + R+AMC+ LD + + ++QFPQ+F I+ D Y Sbjct: 478 VRASAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLD-RGGDRICYIQFPQRFEGIDPSDRY 538 HSP 2 Score: 35.4242 bits (80), Expect = 9.961e-12 Identity = 16/48 (33.33%), Postives = 30/48 (62.50%), Query Frame = 3 Query: 156 IIQDTSGESETIRQADL-VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296 ++ +G+ + D+ + +P+ Y+SREKR + H+ KAGA+N +V Sbjct: 431 VVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAMV 478 The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bpback to top |