FC876906

Overview
NameFC876906
Unique NameFC876906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+PYIL LDCD Y N+  + R+AMCF +DP +   + +VQFPQ+F  I++ D Y  R
Sbjct:  458 VRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRDVCYVQFPQRFDGIDRSDRYANR 522          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+PY+L LDCD Y N+  + ++AMCF +DP +   + +VQFPQ+F  I+++D Y  R
Sbjct:  548 VRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 612          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+PY+L LDCD Y N+  + ++AMCF +DP +   + +VQFPQ+F  I+++D Y  R
Sbjct:  548 VRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 612          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+PY+L LDCD Y N+  + ++AMCF +DP +   + +VQFPQ+F  I+++D Y  R
Sbjct:  549 VRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANR 613          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V+SN+PY+L +DCD Y N+  + R++MCF +DP+    + +VQFPQ+F  I+++D Y  R
Sbjct:  547 IRVSAVLSNAPYLLNVDCDHYINNSKAIRESMCFMMDPQSGKKVCYVQFPQRFDGIDRHDRYSNR 611          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N  Y+L LDCD Y N+  + R+AMCF +DP +  S+ +VQFPQ+F  I++ D Y  R    + +N
Sbjct:  546 VRVSAVLTNGQYMLNLDCDHYINNSKALREAMCFLMDPNLGRSVCYVQFPQRFDGIDRNDRYANRNTVFFDIN 618          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N  Y+L LDCD Y N+  + R+AMCF +DP +   + +VQFPQ+F  I++ D Y  R    + +N
Sbjct:  539 VRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDIN 611          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N  Y+L LDCD Y N+  + R+AMCF +DP +   + +VQFPQ+F  I++ D Y  R    + +N
Sbjct:  539 VRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDIN 611          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 9.961e-12
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561
            +R S ++SN P++L  DCD Y  +  + R+AMC+ LD +    + ++QFPQ+F  I+  D Y
Sbjct:  478 VRASAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLD-RGGDRICYIQFPQRFEGIDPSDRY 538          

HSP 2 Score: 35.4242 bits (80), Expect = 9.961e-12
Identity = 16/48 (33.33%), Postives = 30/48 (62.50%), Query Frame = 3
Query:  156 IIQDTSGESETIRQADL-VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296
            ++   +G+   +   D+ + +P+  Y+SREKR  + H+ KAGA+N +V
Sbjct:  431 VVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAMV 478          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 9.961e-12
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIY 561
            +R S ++SN P++L  DCD Y  +  + R+AMC+ LD +    + ++QFPQ+F  I+  D Y
Sbjct:  478 VRASAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLD-RGGDRICYIQFPQRFEGIDPSDRY 538          

HSP 2 Score: 35.4242 bits (80), Expect = 9.961e-12
Identity = 16/48 (33.33%), Postives = 30/48 (62.50%), Query Frame = 3
Query:  156 IIQDTSGESETIRQADL-VEMPLLIYVSREKRPDHLHHFKAGALNVLV 296
            ++   +G+   +   D+ + +P+  Y+SREKR  + H+ KAGA+N +V
Sbjct:  431 VVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAMV 478          
The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CESA4_ORYSI9.860e-1449.23Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA5_ORYSJ2.869e-1346.15Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI2.869e-1346.15Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ2.869e-1346.15Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA2_ARATH2.869e-1346.15Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA8_ORYSJ1.424e-1243.84Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ORYSJ4.143e-1242.47Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI4.143e-1242.47Probable cellulose synthase A catalytic subunit 2 ... [more]
CSLD5_ORYSJ9.961e-1238.71Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI9.961e-1238.71Putative cellulose synthase-like protein D5 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF01RM1 EHR Citrus clementina cDNA clone KN0AAN3BF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bp
GCACGAGGGGAACATGTGACGAAGGCTGTAGAAGATGGAGATTATGGGAA
CAGCCAAAACCACTCTACTATTATTGAGGTAACTTTGTGTCATACTCTGC
CACTTACAAGTTTAAGTTACTTTATTTAACATCTAATTCAATTGGATTCC
AGCAGATAATACAAGATACTTCTGGTGAGAGTGAGACAATTAGGCAAGCA
GATCTTGTTGAAATGCCTTTGCTTATTTATGTTTCTCGTGAGAAAAGGCC
TGATCATCTTCATCATTTCAAGGCTGGAGCCCTCAATGTTCTTGTATGAA
TCAGTATACGCACAACCTACAGATTATACTTGTTTGTATTTAAAATGCTC
TGATTAACATTGTTCAAGCTTGCAGCTTCGTGTCTCTGGCGTGATAAGCA
ATTCTCCCTACATATTGGGGCTGGACTGTGATATGTACTGCAATGATCCA
ACTTCAGCTAGGCAAGCAATGTGTTTCCACCTTGACCCAAAAATCTCTTC
GTCCTTAGCATTCGTTCAGTTCCCTCAGAAATTCCATAATATCAATAAGT
ATGATATCTACNATGGACGGTTTAGATCTGCATATTGCGTAAATAAATTA
AAGCCTATCTACTATCCCCTTATGCAGATAAATGAGCCAATATTAAACCA
CTAGATGTAGCAATTATGTACAT
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