FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.604e-44
Identity = 88/173 (50.87%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.854e-44
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.854e-44
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOB_HUMAN (Rho-related GTP-binding protein RhoB OS=Homo sapiens GN=RHOB PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.854e-44
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.854e-44
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOV_RAT (Rho-related GTP-binding protein RhoV OS=Rattus norvegicus GN=Rhov PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.026e-43
Identity = 87/173 (50.29%), Postives = 120/173 (69.36%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 698
            IKCV VGDGAVGK+ L++SYT N +P+ Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPEPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAI 202          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.340e-43
Identity = 87/173 (50.29%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+  +  +      P+    G  + + I A +Y+ECS+KT++ V+ VF+ A R  L
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATRAAL 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOV_MOUSE (Rho-related GTP-binding protein RhoV OS=Mus musculus GN=Rhov PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.340e-43
Identity = 87/173 (50.29%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 698
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAI 202          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOV_HUMAN (Rho-related GTP-binding protein RhoV OS=Homo sapiens GN=RHOV PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.340e-43
Identity = 87/173 (50.29%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 698
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAI 202          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.750e-43
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 701
            +K V VGDGAVGKT LLI YT+  FP DYVPTVFDNF+   + +   VNL LWDTAGQEDY+ LRPLSY   DVFI+ +S++ + S +N+  KW+PE+     G PIILVGTK DLR+DK+    +      P+S  +G  L K IGA  + ECS+ T   V  +F AAI+
Sbjct:    9 VKVVVVGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQFFECSALTGNGVNDIFAAAIK 179          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOC_BOVIN4.604e-4450.87Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOB_RAT7.854e-4450.87Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]
RHOB_MOUSE7.854e-4450.87Rho-related GTP-binding protein RhoB OS=Mus muscul... [more]
RHOB_HUMAN7.854e-4450.87Rho-related GTP-binding protein RhoB OS=Homo sapie... [more]
RHOB_BOVIN7.854e-4450.87Rho-related GTP-binding protein RhoB OS=Bos taurus... [more]
RHOV_RAT1.026e-4350.29Rho-related GTP-binding protein RhoV OS=Rattus nor... [more]
RHO_APLCA1.340e-4350.29Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]
RHOV_MOUSE1.340e-4350.29Rho-related GTP-binding protein RhoV OS=Mus muscul... [more]
RHOV_HUMAN1.340e-4350.29Rho-related GTP-binding protein RhoV OS=Homo sapie... [more]
RACD_DICDI1.750e-4352.05Rho-related protein racD OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
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