FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.368e-34
Identity = 69/172 (40.12%), Postives = 110/172 (63.95%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V ++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  I+  +G+ L + + A  Y+ECS+ + + V+ VF+ A+R  +
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWISEIRSNLPCTPVLVVATQTDQRE-----VGPHRASCINAIEGKRLAQDVRAKGYLECSALSNRGVQQVFECAVRTAV 171          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOH_BOVIN (Rho-related GTP-binding protein RhoH OS=Bos taurus GN=RHOH PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.623e-34
Identity = 68/172 (39.53%), Postives = 111/172 (64.53%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V+++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  ++  +G+ L + + A  Y+ECS+ + + V+ VF+ A+R  +
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVLMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEVRSNLPCTPVLVVATQTDQRE-----VGPHRASCVNAIEGKRLAQDVRAKGYLECSALSNRGVQQVFECAVRTAV 171          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.257e-33
Identity = 74/171 (43.27%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V +GDGA GKT LL  +T   FP  Y PT+F+N+  ++ V+G+++ L LWDTAGQE+Y++LR LSY    V ++ F++ S+ S ENV  KW+PE+    PGV ++LV  K DLR   +  +DH  +  I   +G    K I A  Y+ECS+K  + V   F  A RV L
Sbjct:   15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADEEQVDH--SKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVAL 183          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOH_HUMAN (Rho-related GTP-binding protein RhoH OS=Homo sapiens GN=RHOH PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.641e-33
Identity = 68/172 (39.53%), Postives = 111/172 (64.53%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V ++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  ++  +G++L + + A  Y+ECS+ + + V+ VF+ A+R  +
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEIRSNLPCTPVLVVATQTDQRE-----MGPHRASCVNAMEGKKLAQDVRAKGYLECSALSNRGVQQVFECAVRTAV 171          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RACI_DICDI (Rho-related protein racI OS=Dictyostelium discoideum GN=racI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.800e-33
Identity = 72/175 (41.14%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  192 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV--PIILVGTKLDLRDDK---QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 701
            +IK + +GD   GKT ++++Y++ +FPT YVP+  D  S ++  N    ++G WD++   +++  RP +Y   +V IL FS+ S  S+ENVSKKWIPE++ YAP +  PIIL+GTK DLR+D+       ++    PIS  QG  L K I A  Y+ECSS   Q V  +F   +R
Sbjct:    5 YIKLLVLGDSKTGKTTMMMTYSTGSFPTGYVPSHVDATSLDIEYNKQVCHVGFWDSSALAEFDNTRPSTYPNTNVIILCFSIDSPTSFENVSKKWIPEIRQYAPSIHTPIILLGTKCDLREDENTINLLKENNQMPPISYKQGLALSKEIKATMYLECSSLCNQGVNEIFKQVVR 179          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHO1_ENTHI (Ras-like GTP-binding protein RHO1 OS=Entamoeba histolytica GN=RHO1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.776e-33
Identity = 73/173 (42.20%), Postives = 110/173 (63.58%), Query Frame = 3
Query:  180 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 698
            +  + +K V VGDGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDTAGQE+Y+RLRPLSY  +DV +L F++ ++ S++N+S KW PE+KH    + +IL   K+DLR D         +  ++  +G++L + +G  AYIE SS  +  +  VF+ ++
Sbjct:   16 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILDLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH----LYLILQRLKVDLRKDV--------SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.238e-33
Identity = 77/172 (44.77%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG-AVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  +  V+G  V+L LWDTAGQE+Y RLRP SY  AD+ ++ F++ +  S  N   KW  E   Y P  PI+LVG K DLR +  F  +     VPI  A  +++ + IGA  Y+ECS+ T + V  VF+ A R  L
Sbjct:    9 KLVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADEALRYCPDAPIVLVGLKKDLRQEAHFKENATDEMVPIEDA--KQVARAIGAKKYMECSALTGEGVDDVFEVATRTSL 178          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 73/166 (43.98%), Postives = 97/166 (58.43%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE---LRKLIGAPAYIECSSKTQQNVKAVF 686
            K V  GDGA GKT LL  +T   F   Y PTVF+N+  ++ ++   V L LWDTAGQE+++RLR LSY    V ++ FS+ +  S ENV  KW+ E+  Y PGV ++LV +K DLRDD    +D        T Q EE   + + I A  Y+ECSSK  + V  VF
Sbjct:   19 KVVVCGDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPA-VLDRLQRYGTHTDQYEEGLGVARRIRASRYLECSSKHNRGVNEVF 183          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 73/186 (39.25%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH---PGAVP------------ISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  ++ V+   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR   ++  +    PG++             I   +G  + K IGA  Y+ECS+K  + V   F  A R  L
Sbjct:   17 KIVILGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGVNEAFTEAARCAL 202          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RND3_RAT (Rho-related GTP-binding protein RhoE OS=Rattus norvegicus GN=Rnd3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.101e-29
Identity = 66/178 (37.08%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  177 MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 695
            M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOH_MOUSE7.368e-3440.12Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOH_BOVIN9.623e-3439.53Rho-related GTP-binding protein RhoH OS=Bos taurus... [more]
RHO3_SCHPO1.257e-3343.27GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RHOH_HUMAN1.641e-3339.53Rho-related GTP-binding protein RhoH OS=Homo sapie... [more]
RACI_DICDI2.800e-3341.14Rho-related protein racI OS=Dictyostelium discoide... [more]
RHO1_ENTHI4.776e-3342.20Ras-like GTP-binding protein RHO1 OS=Entamoeba his... [more]
RHO2_YEAST6.238e-3344.77GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
RHO3_SCHCO4.942e-3043.98GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RHO3_ASHGO4.942e-3039.25GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RND3_RAT1.101e-2937.08Rho-related GTP-binding protein RhoE OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
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