FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  183 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D ++        VP+  A  +E  + IGA   +E S+K   N++ +F    R +
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-LVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  183 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D ++        VP+  A  +E  + IGA   +E S+K   N++ +F    R +
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.491e-15
Identity = 52/175 (29.71%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  189 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            R  K V VG G VGK+ L I +  + F  +Y PT+ D++    V++     L + DTAGQE+Y  +R    R  + F+L +S+ S+ S+E +S   + I  +K      P+++V  K DL  ++Q          +   +G +L +  G   ++E S+K + NV   F   +R +
Sbjct:    9 REYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKD-QDTFPVVVVANKCDLEYERQ----------VGMNEGRDLARHFGC-KFVETSAKVRINVDQAFQDLVREI 171          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.491e-15
Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            K + VGD +VGKTCL+  +  +TF  +Y  T+  +F      V G   +L LWDTAGQE +  +    YRGA   I+ F+L   AS E+ SK+W+ + LK   P  V + LVG+K DL    Q+ +    A+ ++    +E++       Y   SS T +NV+  F
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-SKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVA----QEIK-----AEYWSVSSLTGENVREFF 209          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.491e-15
Identity = 52/172 (30.23%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            K V +G+GAVGKT L++ Y+ N F   +  T+  +F    + + G  + L +WDTAGQE Y+ L P+ YR +   I+ + +  + S+   ++ WI ELK      V + +VG K+DL  D+Q  +    A+        E  + +GA  Y   + +++   +   D A R++
Sbjct:   18 KVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHK-ARNWIKELKRMLGDKVTLCIVGNKIDL--DRQRTVSEKDAL--------EYAESVGAKHYYTSAKQSKGVAELFLDLAKRIL 178          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.491e-15
Identity = 39/122 (31.97%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 554
            +K + +GD  VGK+C+L+ +  N F   Y+ T+  +F    + ++G  + L +WDTAGQE +  +    YRGA   I+ + + S  S+ ++ K+W+ ++  +A P V  ++VG K DL   +
Sbjct:   34 LKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSI-KRWLIDVDRFASPSVLKLIVGNKCDLNSKR 154          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.491e-15
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            K V +GD  VGK+ LL  +T N F  +   T+   F+   + V G TV   +WDTAGQE Y  +    YRGA   +L + +    ++ENVS +W+ EL+ +A   + I+L+G K DL+        H  AV    AQ    ++ +   ++IE S+    NV+  F   +  V
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMLIGNKTDLK--------HLRAVATEDAQSYAEKEGL---SFIETSALEALNVEKAFQTILSEV 173          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 56/185 (30.27%), Postives = 86/185 (46.49%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +           +   +  EL +  G P Y E S+    N+    +  + +++
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISQAIEMLLDLIM 182          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_MOUSE3.439e-1530.23Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU3.439e-1530.23Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB31_RAT3.439e-1529.94Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE3.439e-1529.94Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAS_LENED4.491e-1529.71Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAB34_RAT4.491e-1535.54Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]
RAB21_GEOCY4.491e-1530.23Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RAB1C_DICDI4.491e-1531.97Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAA2A_ARATH4.491e-1533.14Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB27A_RAT5.865e-1530.27Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
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