FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 48/175 (27.43%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + ++G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  + + W+ EL+ Y     ++  LVG K+D +D+++  +D    +  +            +  +IE S+KT+  V+  F+  +  +L
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKL-ENWLNELETYCTRNDLVKMLVGNKID-KDNRE--VDRNEGLKFARKH---------SMLFIEASAKTRDGVQCAFEELVEKIL 170          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            K V +GD  VGK+ LL  +T N F  +   T+   F+   +   G T+   +WDTAGQE Y  +    YRGA   +L + +  +A+Y++V ++WI EL+  A   + I+LVG K DLR  ++   D          +  E  KL     +IE S+    NV+  F
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSV-ERWILELRENADRNIEIMLVGNKSDLRHLREVSTD-------EAKEFSEKHKL----TFIETSALDSSNVELAF 167          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 50/174 (28.74%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE---NVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 698
            +  ++   +GDG VGKT +   + SN F   Y PT+ D++   + V+  +  L + DTAGQ++   +R    R  + F+L +S+  K+S+    N  ++ I  L      VPI+++G K DL +++Q          ++  +G+EL + +G  +++E S+K + N+  VF  A+
Sbjct:   31 NNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSYRKQICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDR--DDVPIMMIGNKSDLVNERQ----------VTYHEGKELAQRLGM-SFMEVSAKNRSNIDEVFHEAV 191          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 49/174 (28.16%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            +KC+  G   VGK+ LL+ +    F  +   T+   F   +++++ S + L +WDTAGQE +  +    YRGA + +L + +  + S++ +S  W+ E++   +P + I L+G K D +D +           I+T +G +  K      + E S+K  ++V++VFD   + VL
Sbjct:    6 LKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLS-GWMDEVRQMSSPNIVIALIGNKCDCKDKR----------VITTEEGAKNAK-ENDILFFETSAKDYESVESVFDGVSKKVL 167          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  183 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D ++        VP+  A  +E  + IGA   +E S+K   N++ +F    R +
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 5.865e-15
Identity = 51/166 (30.72%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++          I+  QGE+  + I    + E S+K   NV  +F
Sbjct:   43 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 197          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAGQE Y  +    YRGA   +L + +    ++ENV ++W+ EL+ +A   + I+LVG K DL+        H   V    AQ    R+ +   ++IE S+    NV+  F
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENV-ERWLKELRDHADSNIVIMLVGNKSDLK--------HLRDVQTEVAQAFCEREGL---SFIETSALESTNVEKAF 166          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 698
            K V +GD  VGK+ LL  +T N F  +   T+   F+   + ++   +   +WDTAGQE Y  +    YRGA   +L + +    +YENV+ +W+ EL+ H  P + ++L+G K DLR            V +ST + + L +  G   ++E S+    NV+  F  A+
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVT-RWLKELRDHTDPNIVVMLIGNKSDLRH----------LVAVSTDEAKGLAEREGL-YFMETSALEATNVENAFTEAL 171          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 56/185 (30.27%), Postives = 86/185 (46.49%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +           +   +  EL +  G P Y E S+    N+    +  + +++
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEMLLDLIM 182          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 50/175 (28.57%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  189 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F   +R +
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQI 165          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB18B_DANRE5.865e-1527.43Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB11A_DICDI5.865e-1533.33Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RASV_DICDI5.865e-1528.74Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RABQ_DICDI5.865e-1528.16Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB31_HUMAN5.865e-1529.94Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB12_HUMAN5.865e-1530.72Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
YPTC6_CHLRE7.660e-1533.33Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT3_NICPL7.660e-1531.36Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB27A_MOUSE7.660e-1530.27Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAP1B_RAT7.660e-1528.57Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
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