FC876912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686 K + VGD +VGKTCL+ + +TF +Y T+ +F V G +L LWDTAGQE + + YRGA I+ F+L AS E+ +K+W+ + LK P V + LVG+K DL Q+ + A+ ++ +E++ Y SS T +NV+ F Sbjct: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-TKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVA----QEIK-----AEYWAVSSLTGENVREFF 209
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 50/177 (28.25%), Postives = 89/177 (50.28%), Query Frame = 3 Query: 195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVL 710 +K + +G+ VGK+ L++ + + F + T+ +F ++ ++G+ V L +WDTAGQE + L P YRGA I + + S++S+E + K W+ E+ Y +I +V K+D+ P T EE K +IE S+KT++ V+ F+ I ++ Sbjct: 12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKL-KHWMTEVDTYCTNDNVIKMMVANKIDM--------------PNRTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKII 173
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 3 Query: 186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707 S K + +GD VGK+CLL +T F D T+ F ++ V+G + L +WDTAGQE + + YRGA ++ + + +++Y ++S W+ + ++ P IIL+G K DL + ++ + ++ + G ++E S+KT +NV+ F A + + Sbjct: 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 172
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14 Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 3 Query: 186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707 S K + +GD VGK+CLL +T F D T+ F ++ V+G + L +WDTAGQE + + YRGA ++ + + +++Y ++S W+ + ++ P IIL+G K DL + ++ + ++ + G ++E S+KT +NV+ F A + + Sbjct: 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 172 The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bpback to top |