FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 692
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            K + VGD +VGKTCL+  +  +TF  +Y  T+  +F      V G   +L LWDTAGQE +  +    YRGA   I+ F+L   AS E+ +K+W+ + LK   P  V + LVG+K DL    Q+ +    A+ ++    +E++       Y   SS T +NV+  F
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-TKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVA----QEIK-----AEYWAVSSLTGENVREFF 209          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 50/177 (28.25%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            +K + +G+  VGK+ L++ +  + F  +   T+  +F   ++ ++G+ V L +WDTAGQE +  L P  YRGA   I  + + S++S+E + K W+ E+  Y     +I  +V  K+D+              P  T   EE  K        +IE S+KT++ V+  F+  I  ++
Sbjct:   12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKL-KHWMTEVDTYCTNDNVIKMMVANKIDM--------------PNRTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKII 173          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL   +           ++  + ++  +  G   ++E S+KT +NV+  F  A + +
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL   +           ++  + ++  +  G   ++E S+KT +NV+  F  A + +
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 172          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_PIG1.307e-1432.34Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.307e-1432.34Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.307e-1432.34Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.307e-1432.34Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.307e-1432.34Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.307e-1432.34Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB34_MOUSE1.307e-1434.94Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]
RAB18_CAEBR1.307e-1428.25Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RAB14_RAT1.307e-1427.84Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.307e-1427.84Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
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