FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++  F++         AQ  EL        ++E S+ T +NV+  F    R +L
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++  F++         AQ  EL        ++E S+ T +NV+  F    R +L
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++  F++         AQ  EL        ++E S+ T +NV+  F    R +L
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++  F++         AQ  EL        ++E S+ T +NV+  F    R +L
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  150 KATVLKKIKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            K T   +   S     K + VGD AVGK+ LL+ +    F  +   T+   F S ++ +N   + L +WDTAGQE +  +    YRGA   ++ + +  + S+E+++  W+ + + ++   V  +L+G K DL  ++Q          +ST++ +E  +  G   + E S+KT  NV   F+ +   +L
Sbjct:   10 KPTFNDRKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLN-SWLTDCRKFSSCDVTTVLIGNKADLEANRQ----------VSTSEAKEFAEKNGL-MFFETSAKTALNVDEAFEKSTEQIL 186          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  189 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            R  K V +G+ +VGKT L+  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V I+ + + +  S+ N ++KWI +++      V I+LVG K DL D +Q          ++  +GE+  K +    ++E S+K   NVK +F
Sbjct:   10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLADKRQ----------VTQEEGEKKAKELKI-MHMETSAKAGHNVKLLF 165          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 49/176 (27.84%), Postives = 90/176 (51.14%), Query Frame = 3
Query:  186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707
            SR  K V +G G VGK+ + + + S+ FP  + PT+ D +   V ++     L + DTAGQ ++  +R    RG + FI+ +S+  + S++  +  K+ I +++H    +P++LVG K+DL   +Q          +ST +G  L +     A+ E S+  +  +   F   +R +
Sbjct:   18 SREYKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH-TYEIPLVLVGNKIDLEQFRQ----------VSTEEGMNLARDYNC-AFFETSAALRFGIDDAFQGLVREI 181          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  189 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 701
            R  K V VG G VGK+ L I    + F  +Y PT+ D++     ++   V L + DTAGQE+Y+ +R    R  + F+L +S+ S  S++ ++  +   L+   +  VP+++VG K DL  ++Q          +S   G  L      P ++E S+K + NV+  F   +R
Sbjct:    3 REYKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQ----------VSYEDGLALANSFNCP-FLETSAKQRINVEEAFYGLVR 163          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y N    W+ + +  A P + IIL G K DL  D++  F++         AQ  EL        ++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAF 162          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 59/183 (32.24%), Postives = 99/183 (54.10%), Query Frame = 3
Query:  180 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL---RKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            S  R  K V +G G+VGK+ L + Y  N F +  +PTV   F   VV  G+T + L +WDTAGQE Y+ +  L +RGA+  +L + +  K S+   +++W+ +L +   PG V ++LVG K DL  +++          ++  +G+E    +KL+    ++E S+K    V  VF+   + +L
Sbjct:   15 SQPRVFKLVLLGSGSVGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLK-AQQWLKDLEEELHPGEVLVMLVGNKTDLSQERE----------VTFQEGKEFADSQKLL----FMETSAKLNHQVSEVFNTVAQELL 181          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4B_RAT1.707e-1431.61Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.707e-1431.61Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.707e-1431.61Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.707e-1431.61Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB2B_DICDI1.707e-1427.51Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RYH1_SCHPO2.229e-1432.74GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RIT2_MOUSE2.229e-1427.84GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RAS1_CANAL2.229e-1430.23Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RAB4B_DANRE2.229e-1433.73Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB17_HUMAN2.229e-1432.24Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
back to top