FC876912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14 Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710 K + +G GK+CLL + N F D T+ F + VV V G TV L +WDTAGQE + + YRGA +L + + S+ +Y +++ W+ + + A P + +IL G K DL +++ F++ AQ EL ++E S+ T +NV+ F R +L Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14 Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710 K + +G GK+CLL + N F D T+ F + VV V G TV L +WDTAGQE + + YRGA +L + + S+ +Y +++ W+ + + A P + +IL G K DL +++ F++ AQ EL ++E S+ T +NV+ F R +L Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14 Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710 K + +G GK+CLL + N F D T+ F + VV V G TV L +WDTAGQE + + YRGA +L + + S+ +Y +++ W+ + + A P + +IL G K DL +++ F++ AQ EL ++E S+ T +NV+ F R +L Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14 Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710 K + +G GK+CLL + N F D T+ F + VV V G TV L +WDTAGQE + + YRGA +L + + S+ +Y +++ W+ + + A P + +IL G K DL +++ F++ AQ EL ++E S+ T +NV+ F R +L Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 170
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14 Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 3 Query: 150 KATVLKKIKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710 K T + S K + VGD AVGK+ LL+ + F + T+ F S ++ +N + L +WDTAGQE + + YRGA ++ + + + S+E+++ W+ + + ++ V +L+G K DL ++Q +ST++ +E + G + E S+KT NV F+ + +L Sbjct: 10 KPTFNDRKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLN-SWLTDCRKFSSCDVTTVLIGNKADLEANRQ----------VSTSEAKEFAEKNGL-MFFETSAKTALNVDEAFEKSTEQIL 186
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14 Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 3 Query: 189 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686 R K V +G+ +VGKT L+ + + F Y T+ D S + + TV L LWDTAGQE + L P R + V I+ + + + S+ N ++KWI +++ V I+LVG K DL D +Q ++ +GE+ K + ++E S+K NVK +F Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLADKRQ----------VTQEEGEKKAKELKI-MHMETSAKAGHNVKLLF 165
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14 Identity = 49/176 (27.84%), Postives = 90/176 (51.14%), Query Frame = 3 Query: 186 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 707 SR K V +G G VGK+ + + + S+ FP + PT+ D + V ++ L + DTAGQ ++ +R RG + FI+ +S+ + S++ + K+ I +++H +P++LVG K+DL +Q +ST +G L + A+ E S+ + + F +R + Sbjct: 18 SREYKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH-TYEIPLVLVGNKIDLEQFRQ----------VSTEEGMNLARDYNC-AFFETSAALRFGIDDAFQGLVREI 181
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14 Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 3 Query: 189 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 701 R K V VG G VGK+ L I + F +Y PT+ D++ ++ V L + DTAGQE+Y+ +R R + F+L +S+ S S++ ++ + L+ + VP+++VG K DL ++Q +S G L P ++E S+K + NV+ F +R Sbjct: 3 REYKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQ----------VSYEDGLALANSFNCP-FLETSAKQRINVEEAFYGLVR 163
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14 Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3 Query: 198 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 686 K + +G GK+CLL + N F D T+ F + VV V G TV L +WDTAGQE + + YRGA +L + + S+ +Y N W+ + + A P + IIL G K DL D++ F++ AQ EL ++E S+ T +NV+ F Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAF 162
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14 Identity = 59/183 (32.24%), Postives = 99/183 (54.10%), Query Frame = 3 Query: 180 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL---RKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710 S R K V +G G+VGK+ L + Y N F + +PTV F VV G+T + L +WDTAGQE Y+ + L +RGA+ +L + + K S+ +++W+ +L + PG V ++LVG K DL +++ ++ +G+E +KL+ ++E S+K V VF+ + +L Sbjct: 15 SQPRVFKLVLLGSGSVGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLK-AQQWLKDLEEELHPGEVLVMLVGNKTDLSQERE----------VTFQEGKEFADSQKLL----FMETSAKLNHQVSEVFNTVAQELL 181 The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bpback to top |