FC876912

Overview
NameFC876912
Unique NameFC876912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.000e-52
Identity = 95/174 (54.60%), Postives = 131/174 (75.29%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.000e-52
Identity = 95/174 (54.60%), Postives = 131/174 (75.29%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.978e-51
Identity = 102/174 (58.62%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+  QG+ L K I A  Y+ECS+  Q  VK VF  A+R VL
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.978e-51
Identity = 102/174 (58.62%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+  QG+ L K I A  Y+ECS+  Q  VK VF  A+R VL
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.978e-51
Identity = 102/174 (58.62%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+  QG+ L K I A  Y+ECS+  Q  VK VF  A+R VL
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.978e-51
Identity = 95/174 (54.60%), Postives = 126/174 (72.41%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            +KCV VGDGAVGKTCLLISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S  S+ENV +KW PE+ H+ PGVP ++VGT++DLR++K     +      PI+  QGE+  + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRENKMVIEKLQRQRLRPITPEQGEKFARELRAVKYVECSALTQRGLKNVFDEAIVAAL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: CDC42_CAEEL (Cell division control protein 42 homolog OS=Caenorhabditis elegans GN=cdc-42 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.889e-51
Identity = 97/174 (55.75%), Postives = 127/174 (72.99%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS+ENV +KW+PE+ H+    P +LVGT++DLRDD      +      P+ST  GE+L K + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHHCSKTPFLLVGTQVDLRDDPGMLEKLAKNKQKPVSTDVGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.079e-51
Identity = 96/174 (55.17%), Postives = 128/174 (73.56%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++     +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.633e-51
Identity = 96/174 (55.17%), Postives = 127/174 (72.99%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177          
BLAST of FC876912 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 6.633e-51
Identity = 96/174 (55.17%), Postives = 127/174 (72.99%), Query Frame = 3
Query:  195 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 710
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177          
The following BLAST results are available for this feature:
BLAST of FC876912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOQ_RAT6.000e-5254.60Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE6.000e-5254.60Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOG_MOUSE2.978e-5158.62Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN2.978e-5158.62Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR2.978e-5158.62Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
CDC42_ASHGO2.978e-5154.60Cell division control protein 42 OS=Ashbya gossypi... [more]
CDC42_CAEEL3.889e-5155.75Cell division control protein 42 homolog OS=Caenor... [more]
CDC42_AEDAE5.079e-5155.17Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
CDC42_DROME6.633e-5155.17Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_ANOGA6.633e-5155.17Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BF08RM1 EHR Citrus clementina cDNA clone KN0AAN3BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876912 ID=FC876912; Name=FC876912; organism=Citrus clementina; type=EST; length=841bp
CGCTCAACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGAT
GGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGAT
CTGAGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAA
AAGCCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAG
TGCGTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTC
TTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATA
ATTTCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTA
TGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCCTTAAGTTA
CCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAA
GTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCA
CCTGGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGA
TAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTC
AGGGGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGC
AGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCATCAG
AGTTGTCCTCCAACCACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAA
AGGCCTGCTCTATATTGTGATTGAAATTAGGTGTAAAGAGATTATGACCC
TCTGTCCCTTCTCAAATTCTCCCTCATCTTTCTTCCTATGC
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