FC876916

Overview
NameFC876916
Unique NameFC876916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length802
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876916 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 61/213 (28.64%), Postives = 90/213 (42.25%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA 696
            K RFVVR +NK +  Q++     GD V+AAA++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  D                     I G H+A+Y  +L  + PE+YQ  F + +++G+  +     +++V A I  D    K E+PA
Sbjct:   32 KPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED---YKVEQPA 201          
BLAST of FC876916 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 56/188 (29.79%), Postives = 88/188 (46.81%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 624
            K R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of FC876916 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 56/188 (29.79%), Postives = 88/188 (46.81%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 624
            K R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of FC876916 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 60/190 (31.58%), Postives = 82/190 (43.16%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEA 630
            K R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHSD+     S+             I G H+AAY     E  PE+    F EY K+G+    L A
Sbjct:   34 KPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY----YEMNPER----FGEYEKRGLKPSDLPA 176          
BLAST of FC876916 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 56/188 (29.79%), Postives = 85/188 (45.21%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 624
            K R V R +  ++ AQ++S +  GD VL +A+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D           ++ AE  R  + G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:   32 KPRLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
The following BLAST results are available for this feature:
BLAST of FC876916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL18_IGNH41.253e-1128.6450S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_METM72.138e-1129.7950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM62.138e-1129.7950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_ARCFU3.646e-1131.5850S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METM56.220e-1129.7950S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BG01RM1 EHR Citrus clementina cDNA clone KN0AAN3BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876916 ID=FC876916; Name=FC876916; organism=Citrus clementina; type=EST; length=802bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGA
TGGAGGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCAAG
AAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGC
TGCCATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCA
AAGAACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAGGAAG
GCGAAGCTGGTTGAAAGGCTGAATGCCCTTAACTCGGCAGTTGATGAAGA
GG
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