FC876920

Overview
NameFC876920
Unique NameFC876920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10435 contig Ccv1_Contig10435:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  453 SDARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSAL------PKPATTEGNKHRRRLMGF---PEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            SD R ++SAAL+N++TCL+     +G +K+ +   ++     V N L+ +      PKP   +     +   GF   P W+   DR++LQ+   DN      V  VAADGTG+FTTI+DA+  AP+ S  R VI++K+GVY
Sbjct:  117 SDLRTWISAALSNQDTCLDGFEGTNGIIKKIVAGGLSKVGTTVRNLLTMVHSPPSKPKPKPIKAQTMTKAHSGFSKFPSWVKPGDRKLLQT---DNITVADAV--VAADGTGNFTTISDAVLAAPDYSTKRYVIHVKRGVY 252          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16
Identity = 67/232 (28.88%), Postives = 105/232 (45.26%), Query Frame = 3
Query:  159 ISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSDARAYLSAALTNKNTCLESLNSAS-GSLKQPLV-NSITSTYRYVSNSLSALPKPATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            + ++C  TP+P  C   L              F   +LQ+A+  A    +     GS    E+++   +DC+EL+++T+  L ++      +    T  D + +LS ALTN  TC  SL          PL+ N++T   + +SN+LS    P      K      GFP W+   DR++LQ++   N       + VA DG+G+  TI +A+  A      R VI IK G Y
Sbjct:   28 VKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQT----SNSSPGCTKVDKQTWLSTALTNLETCRASLEDLGVPEYVLPLLSNNVT---KLISNTLSLNKVPYNEPSYKD-----GFPTWVKPGDRKLLQTTPRAN-------IVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY 240          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16
Identity = 75/271 (27.68%), Postives = 118/271 (43.54%), Query Frame = 3
Query:  159 ISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSN------IVEKQRG-------TIQDCKELHQITLSALQKSLPKIRAAHDAKTL----SDARAYLSAALTNKNTCLE--SLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTE-------------GNKHRRRLM---------GFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            + + C ST +P+ CF ++                  T Q  + EA    NL + A   N      ++ K++G        + DC E    TL  L  ++  +      K+L     D +  +S+A+TN+ TCL+  S + A   +++ L+          SN+L+ +     T+              N + R+L          G+P+WLS  DRR+LQ S    +       TVA DG+GDFTT+  A+  AP  S+ R VI+IK GVY
Sbjct:   62 LKSVCSSTLYPELCFSAVAATGGKEL----------TSQKEVIEAS--LNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTIKAD------ATVADDGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVY 314          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 65/253 (25.69%), Postives = 119/253 (47.04%), Query Frame = 3
Query:  159 ISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQ-TLQMAISEAGK----VTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLS----DARAYLSAALTNKNTCLE--SLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTE--------GNKHRRRLMG----FPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            + + C +T HP+ C+ ++               +++ +L + +    +    V  L+       +  +++  + DC E    TL  L  ++  +    + K+L     D +  +S+A+TN+ TCL+  S + A   +++ L+       +  SN+L+ +     T+           + R+L+     +PEWLS  DRR+LQSS    +      + VAADG+GD+ T+++A+  AP  S  R VI IK GVY
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTR--KGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPANNRKLVEDNGEWPEWLSAGDRRLLQSSTVTPD------VVVAADGSGDYKTVSEAVRKAPEKSSKRYVIRIKAGVY 310          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 62/243 (25.51%), Postives = 108/243 (44.44%), Query Frame = 3
Query:  156 SISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSDARAYLSAALTNKNTC---LESLNSASGSLKQPLVNSITSTYRYVSNSLSALP---KPATTEGNKHRRRLMG------FPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +IS  C  + +P+ C ++L L             +  +    + +  K     S    + +  + R     C EL   ++ AL ++L  +      ++ SD   +LS+A+TN +TC    + +    G +K  ++ ++      VSN L+      K  +     + R+L+G       P WL R+DR +L +     + D    +TV+ DG+G F TI +AI  AP +S  R VI +K G Y
Sbjct:   74 AISRTCSKSLYPNLCIDTL-LDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAIFAGKVKDLSGVPVVNNRKLLGTEETEELPNWLKREDRELLGTPTSAIQAD----ITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGRY 311          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.556e-15
Identity = 67/245 (27.35%), Postives = 108/245 (44.08%), Query Frame = 3
Query:  156 SISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSDARAYLSAALTNKNTCLESLNSAS-GSLKQPLVNSITSTYRYVSNSLSALPKPATTEGNK------HRRRLMG-------FPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +IS  C+ T  P+ C +SL               +  T+ M +          +     ++  + R     C EL   ++ AL ++L  +  +  AK   D   +LSAALTN +TC E  +    G +K  +  ++ +    VSN L+     A+ +G+         RRL+G       FP W+  K+R IL+      + D    + V+ DG G   TI++AI  AP NS  R++I +K G Y
Sbjct:   86 AISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSV-VSSSAKP-QDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFS--ASHDGDDFAGVPIQNRRLLGVEEREEKFPRWMRPKEREILEMPVSQIQAD----IIVSKDGNGTCKTISEAIKKAPQNSTRRIIIYVKAGRY 322          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.032e-15
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  345 KQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSD---ARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +Q+G + DC EL   ++  +  S+    AA D ++ S+   A+++LS  LTN  TCL+ L S S S K   V     T   V+  L+ L    T      R+ L   P W+S +DR++++SS  D   ++     VA DGTGD+ T+ +A+  AP+ +  R VI +K G+Y
Sbjct:  110 RQQGALTDCLELLDQSVDLVSDSI----AAIDKRSRSEHANAQSWLSGVLTNHVTCLDELTSFSLSTKNGTVLDELITRAKVA--LAMLASVTTPNDEVLRQGLGKMPYWVSSRDRKLMESSGKDIIANR----VVAQDGTGDYQTLAEAVAAAPDKNKTRYVIYVKMGIY 270          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 3
Query:  333 NIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSDARAYLSAALTNKNTCL--------ESLNSASGSLKQPLVNSITSTYRYVSNSLSAL-------PKPATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            N+   +R   +DC  L   T+S L+ ++  +R++  +   +D    L+  +T ++TCL        E+ N  +  L + L   I      +SNSL  L       P P ++E +      + +P WLS  D+R+L++   +  Y+    L+VA DGTG+FTTI DA+  APN S+ R +I IK G Y
Sbjct:   85 NLTHYERCAFEDCLGLLDDTISDLETAVSDLRSS--SLEFNDISMLLTNVMTYQDTCLDGFSTSDNENNNDMTYELPENLKEIILDISNNLSNSLHMLQVISRKKPSPKSSEVD------VEYPSWLSENDQRLLEAPVQETNYN----LSVAIDGTGNFTTINDAVFAAPNMSETRFIIYIKGGEY 259          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15
Identity = 57/191 (29.84%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  333 NIVEKQRGTIQDCKELHQITLSALQKSLPKIR------------AAHDAKTLS-DARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSN------SLSALPKPATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +I  +++  I+DCKEL   +++ L  S+ ++              +HDA     + + +LSAA++N++TCLE         ++ +  S+    + VSN       L+ALP  A+         ++  PEWL+  D  ++   D    +  +    VA DG G + TI +AIN APN+S  R VI +K+GVY
Sbjct:   96 SIRSREQVAIEDCKELVGFSVTELAWSMLEMNKLHGGGGIDLDDGSHDAAAAGGNLKTWLSAAMSNQDTCLEGFEGTERKYEELIKGSLRQVTQLVSNVLDMYTQLNALPFKAS-----RNESVIASPEWLTETDESLMMRHDPSVMHPNT---VVAIDGKGKYRTINEAINEAPNHSTKRYVIYVKKGVY 278          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.720e-14
Identity = 58/249 (23.29%), Postives = 115/249 (46.18%), Query Frame = 3
Query:  147 NISSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRG-----TIQDCKELHQITLSALQKS---LPKIRAAHDAKTLSDARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTEGNK-----HRRRLMG--FPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            ++ +I + C  T + + C ++L+               L+ ++ A +   K  + ++   S  ++E Q+       +  CKEL    +  L KS   L K       + L   R +LSA ++++ TCL+      G+  + +  ++ +  +   N L+ + + +   G       + RRL+   FP W+  + RR+L +   + + D    + VA DG+G + TI +A+NF P   +   V++IK+G+Y
Sbjct:   53 SVKAIKDVCAPTDYKETCEDTLRKDAKDTSDP------LELVKTAFNATMKQISDVAKK-SQTMIELQKDPRAKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVTEMSNYLGQMQIPEMNSRRLLSQEFPSWMDARARRLLNAPMSEVKPD----IVVAQDGSGQYKTINEALNFVPKKKNTTFVVHIKEGIY 290          
The following BLAST results are available for this feature:
BLAST of FC876920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PME32_ARATH5.347e-1637.59Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME2_CITSI6.983e-1628.88Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME2_ARATH6.983e-1627.68Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PMEU1_SOLLC9.121e-1625.69Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME61_ARATH1.191e-1525.51Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH1.556e-1527.35Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_SOLLC2.032e-1533.92Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME39_ARATH2.654e-1531.55Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME22_ARATH2.654e-1529.84Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME28_ARATH1.720e-1423.29Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BG06RM1 EHR Citrus clementina cDNA clone KN0AAN3BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876920 ID=FC876920; Name=FC876920; organism=Citrus clementina; type=EST; length=849bp
TTCGGCACGAGGCTATTCACTCTGCCTTCTTCATATCGGCTGTCATGGCT
ACTTCCTCCTTTCTGAAACTCACCTTGCTCCTCTTCACAATCTCCATCTA
CATCACAGCTACTCTAAGCACTCCTTCAACAACTTCTCTACACACCAACA
TATCTTCAATAAGCAATTTTTGCAAAAGCACTCCGCACCCAGATGCTTGT
TTTGAGTCATTGAAGCTCTCTATATCAATCAATATCAGTCCAAACATCAT
CAACTTCTTGCTTCAAACTCTCCAAATGGCCATATCCGAAGCCGGGAAGG
TCACCAATCTATTGTCCGGTGCAGGCAGCTCTAATATTGTCGAGAAACAG
AGAGGCACAATCCAAGATTGTAAAGAACTTCACCAAATCACATTATCCGC
TTTACAGAAATCTCTCCCGAAAATCCGTGCAGCTCATGATGCTAAAACCT
TATCCGATGCAAGAGCATATCTCAGTGCAGCTCTAACAAATAAGAATACT
TGTTTAGAGAGCCTTAACTCTGCTTCAGGTTCTTTGAAGCAACCTTTAGT
GAACTCTATAACAAGTACTTACAGGTATGTGAGCAACTCCCTGTCAGCAC
TTCCAAAGCCAGCTACGACAGAAGGCAACAAACACCGCCGCCGCCTAATG
GGATTTCCAGAATGGTTGTCAAGAAAAGATCGCCGGATTCTGCAGAGCTC
CGATGACGATAATGAGTATGACCAGAGTCAAGTGCTGACTGTGGCTGCCG
ATGGAACAGGAGATTTCACTACCATCACTGATGCGATAAATTTTGCTCCC
AATAACAGCGATGATAGAGTAGTCATCAATATCAAACAAGGGGTTTATG
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