FC876929

Overview
NameFC876929
Unique NameFC876929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANV----------ISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVS--SNGRLQGRLEVSRAFGD 699
            A+FA++DGHGG  AA YA   +H N            +A    FR TDE  LQ++     Q G T VC  I G  + VA +GD++ ++ +                 + + +   HK     E+ARI+  GG VS     R+ G L VSRA GD
Sbjct:  189 AYFAVFDGHGGVDAARYASVHVHTNASHQPELRTNPAAALKEAFRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQG---------------RVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGD 327          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  280 FAIYDGHGGRLAAEYAQKRLHANVIS----------AGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNG--RLQGRLEVSRAFGD 699
            F I+DGHGG  AAEY ++ L  N++           A    +++TD + L+        DG+TA    ++G  ++VAN+GD++ +V+++                KAI ++ +HK     ER RI+ +GG +   G  R+ G L +SRAFG+
Sbjct:  133 FGIFDGHGGSRAAEYLKEHLFNNLMKHPQFLTDTKLALNETYKQTDVAFLESEKDTYRDDGSTASAAVLVGNHLYVANVGDSRTIVSKAG---------------KAIALSDDHKPNRSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFGN 269          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 65/220 (29.55%), Postives = 96/220 (43.64%), Query Frame = 1
Query:   85 KSKIEKVNENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEXXXXXXXXXXXXXPPNL----RCAHFAIYDGHGGRLAAEYAQKRLHANVIS-AGLPR---------FRKTDESLLQE-SVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGD 699
            KS  EK  EN +  A   +         + +    D GSRHTME                       A + ++DGHGG+ AA++    L   ++     PR         F +TD +     SV+     G TA+   ++GR++ VAN GD +AV+                   KAI ++R+HK    +E+ RI+ SGG V  +G L G+L V+RA GD
Sbjct:   47 KSGTEKTFENMDAVAYMPV---------VRSGGWADIGSRHTMEDVFICSDNLMKEFGVESFEDGPSAFYGVFDGHGGKHAADFVCSNLARFIVEDEDFPREIEKALSSAFLQTDAAFADACSVNSSLASGTTALAALVVGRSLLVANAGDCRAVLCCRG---------------KAIEMSRDHKPSCNREKVRIEASGGYV-YDGYLNGQLNVARAIGD 241          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 50/154 (32.47%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANVI----------SAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNG--RLQGRLEVSRAFGD 699
            A+FA++DGHGG  AA YA   +H N             A    FR+TD+  L+++     Q G T VC  I G T+ VA +GD++ ++ +                 + + +   H+     E+ARI+  GG VS     R+ G L VSRA GD
Sbjct:  192 AYFAVFDGHGGVDAARYAAVHVHTNAARQPELPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQG---------------QVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGD 330          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 50/154 (32.47%), Postives = 72/154 (46.75%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANV----------ISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVS--SNGRLQGRLEVSRAFGD 699
            A+FA++DGHGG  AA YA   +H N            +A    FR TD+  LQ++     Q G T VC  I G  + VA +GD++ ++ +                 + + +   HK     E++RI+  GG VS     R+ G L VSRA GD
Sbjct:  188 AYFAVFDGHGGVDAARYASVHVHTNASHQPELLTDPAAALKEAFRHTDQMFLQKAKRERLQSGTTGVCALITGAALHVAWLGDSQVILVQQG---------------QVVKLMEPHKPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGD 326          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 51/154 (33.12%), Postives = 74/154 (48.05%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANVI----------SAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNG--RLQGRLEVSRAFGD 699
            A+FA++DGHGG  AA YA   LH N++           A    FR TDE  +Q++     + G T V  +I G  + VA +GD++ ++ R                 +A+ + + HK     E+ RI+  GG V   G  R+ G L VSRA GD
Sbjct:  264 AYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKG---------------QAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGD 402          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 51/154 (33.12%), Postives = 74/154 (48.05%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANVI----------SAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNG--RLQGRLEVSRAFGD 699
            A+FA++DGHGG  AA YA   LH N++           A    FR TDE  +Q++     + G T V  +I G  + VA +GD++ ++ R                 +A+ + + HK     E+ RI+  GG V   G  R+ G L VSRA GD
Sbjct:  264 AYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKG---------------QAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGD 402          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANVI----------SAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNG--RLQGRLEVSRAFGD 699
            A+FA++DGHGG  AA YA   LH N++           A    FR TDE  +Q++     + G T V  +I G  + VA +GD++ ++ R                 +A+ + + HK     E+ RI+  GG +   G  R+ G L VSRA GD
Sbjct:  278 AYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKG---------------QAVELMKPHKPDREDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGD 416          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  280 FAIYDGHGGRLAAEYAQKRLHANVISAGL----PR------FRKTDESLLQESVSGGWQDGATAV-CIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSS----NGRLQGRLEVSRAFGD 699
            FAIYDGH G     Y QKRL +N++  G     PR      + KTD+++L  S   G + G+TAV  I I GR +++AN+GD++AV++   +I   S +H                      ER+ I+  GG VS+      R+ G+L VSRAFGD
Sbjct:   66 FAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAYEKTDQAILSNSSDLG-RGGSTAVTAILINGRKLWIANVGDSRAVLSHGGAITQMSTDHEPR------------------TERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGD 202          
BLAST of FC876929 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  274 AHFAIYDGHGGRLAAEYAQKRLHANVIS----------AGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTREHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGD 699
            A + ++DGHGG  AA + +K +   V+           A    F KTD +L   S S     G TA+   IL +T+ +AN GD++AV+ +                 +AI ++++HK     ER RI+K GG +  +G L G+L V+RA GD
Sbjct:  105 AFYGVFDGHGGVDAASFTKKNIMKLVMEDKHFPTSTKKATRSAFVKTDHALADAS-SLDRSSGTTALTALILDKTMLIANAGDSRAVLGKRG---------------RAIELSKDHKPNCTSERLRIEKLGGVI-YDGYLNGQLSVARALGD 239          
The following BLAST results are available for this feature:
BLAST of FC876929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PPM1F_MOUSE4.051e-1333.77Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
P2C76_ARATH4.051e-1331.58Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C57_ORYSJ5.290e-1329.55Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
PPM1F_HUMAN9.024e-1332.47Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
PPM1F_RAT2.010e-1232.47Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_RAT2.010e-1233.12Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE2.010e-1233.12Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
PPM1E_HUMAN3.429e-1232.47Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C09_ARATH5.849e-1236.54Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C47_ARATH1.303e-1132.89Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BH06RM1 EHR Citrus clementina cDNA clone KN0AAN3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876929 ID=FC876929; Name=FC876929; organism=Citrus clementina; type=EST; length=701bp
GCACGAGGTGAAAGCGAGACTCAGGAGCAGCAGCAGAAGCCGAAACGTGA
AGGTGACTTCGATGACTTCAATTTGATCGCCAAAAAATCCAAAATCGAAA
AAGTTAACGAAAATGAAGAAGAAGCAGCACGTGCACAAATTATGCACAAG
CAAATTGATTTTGTTGAAATCGAGGCCGATGCCGCCGAAGATAAGGGCTC
TAGACACACCATGGAAGATGCTTCGGTTGTCTTGGTCGATGCCTCCTCTG
ATTCTCCTCCGAATTTGAGGTGTGCGCATTTTGCAATATACGACGGACAT
GGAGGTCGTTTAGCAGCTGAGTATGCTCAGAAGCGTCTACATGCTAATGT
TATTTCAGCTGGCTTACCACGTTTTCGGAAAACGGATGAATCTCTTCTTC
AAGAAAGTGTTTCAGGAGGATGGCAGGACGGTGCTACAGCTGTATGTATT
TGGATACTAGGACGAACTGTTTTCGTTGCTAATATTGGGGATGCAAAAGC
AGTGGTTGCTAGATCATCTATTGTTGATGGATCTAATAATCATCTGGATG
AATTAAGTTCATTGAAGGCCATTGTGGTGACAAGGGAACACAAAGCCATC
TATCCGCAGGAACGGGCTCGTATTCAGAAGTCTGGTGGTACTGTCAGTTC
AAATGGAAGATTACAAGGACGCCTTGAAGTTTCTAGGGCATTTGGAGATC
G
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